Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00327 ATGCTCCGGGGATTGATGAATCTGCTCTCCCTTTGCTGGAAGCCGTTCGGGCATGCTACTGAGAATTTGAGCTCTGTTGGAGTAATTGGAACCACTTGTGGTGGTAAAGATACTAAGGATAGCTTGCTCTGGTTCTATGATTATGGTAAGTATGCTTCCGGTGAATTTTCCATGGCTGTTGTACAGGCCAACCAAGTGCTTGAAGACCAGAGCCAGATTGAATCTGGTCCTTTTGGCACTTTCGTCGGAATCTACGATGGCCATGGCGGCCCCGATGCTGCTCGATATGTCTGCGATAATTTGTTTAGGCGTTTCCAAGATGAACAACGAGGAGTTGTGACTCGTGAAACCATTCTGAATGCTTTTCGTCAAACAGAGGAAGGGTTCACAGCCGTTGTGTCAGACTTGTGGAATACTCGACCCCAGATAGCAACAGTTGGGACATGCTGTCTAGTAGGGGTGATACATGAGCAGACACTCTACATTGCAAGTCTAGGAGATTCTCGTGCGGTGTTAGGGAAGAAAGTTGGCAACACTGGGGAGATTGCTGCCATTCAGTTATCAACAGAGCATAATGCAAATCTTGAGGATATCAGGCAAGAATTAAGAGACATGCATCCCAATGATCCTCAAATTGTGGTTCAAAGGCATGGAGTTTGGAGAGTGAAAGGAATTATACAGCATACTTATCTTCATATGATTGCTCGTATAAGATGA 717 45.47 MLRGLMNLLSLCWKPFGHATENLSSVGVIGTTCGGKDTKDSLLWFYDYGKYASGEFSMAVVQANQVLEDQSQIESGPFGTFVGIYDGHGGPDAARYVCDNLFRRFQDEQRGVVTRETILNAFRQTEEGFTAVVSDLWNTRPQIATVGTCCLVGVIHEQTLYIASLGDSRAVLGKKVGNTGEIAAIQLSTEHNANLEDIRQELRDMHPNDPQIVVQRHGVWRVKGIIQHTYLHMIARIR 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2155518 2157685 + Cp4.1LG12g03230.1 Cpe12g00327 478324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00327 238 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Cpe12g00327 238 Pfam Protein phosphatase 2C 80 203 IPR001932 -
Cpe12g00327 238 SUPERFAMILY PP2C-like 64 227 IPR036457 -
Cpe12g00327 238 CDD PP2Cc 56 227 IPR001932 -
Cpe12g00327 238 PANTHER PROTEIN PHOSPHATASE 2C 42-RELATED 3 227 - -
Cpe12g00327 238 SMART PP2C_4 49 235 IPR001932 -
Cpe12g00327 238 ProSiteProfiles PPM-type phosphatase domain profile. 52 238 IPR001932 -
Cpe12g00327 238 PANTHER ALPHABET, ISOFORM E-RELATED 3 227 - -
Cpe12g00327 238 Gene3D - 47 230 IPR036457 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe12g00327 Cpe17g00072 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00327 Cpe-Chr12:2155518 Cpe05g01363 Cpe-Chr5:9586872 4.00E-87 dispersed
Cpe12g00327 Cpe-Chr12:2155518 Cpe17g00072 Cpe-Chr17:417449 7.35E-157 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00327 K01102 - csv:101207284 427.943