Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe12g00330 | ATGGCGTCATCTGTTCATTCGAACTCCGATCGCGCGCGGGAGTCTTCAAGGAGGCAGAAGAAGAAGAAAAGCCACGGCAACAGAGATCATCATCAAAACCAGAACCATATTAAATGGAAGTCTCAAGCGCAGCAAGAAATTTACTCGTCCAAGCTGGTCCGAGCATTGAATCAAGTGAGGCTCAGTCCTCCGAACGAGGCGCCGCGCCGCGGCAGAGCCGTACGCGAGGCCGCTGACAGAGTCCTCGCCGTCGCTGCCAAGGGGAGAACCAGGTGGAGCCGAGCCATCTTAACGAACAGGCTGAAACTCAAATTCAGGAAGCCGAAAAGACAGAGATCGGCATCCACCGCCGGAAACAACCGCTCAAAGAAACCTAGAGTTAGCGTATTGCGGTTGAGAGGGAAATCCTTACCGGCGGTACAAAGGAAAGTTAGGGTTCTTGGACGGCTAGTTCCCGGTTGCCGGAAAGAACCGTTGCCGGTTATCCTGGAAGAGGCTACCGATTACATAGCTGCACTTGAAATGCAAGTTCGAGCCATGAGTGCCCTCGCCGAGTTGCTCTCGGCCTCAACTTCTGCCGCAGGCTCTAGCTCCGCCCCACCAAACTGA | 609 | 54.68 | MASSVHSNSDRARESSRRQKKKKSHGNRDHHQNQNHIKWKSQAQQEIYSSKLVRALNQVRLSPPNEAPRRGRAVREAADRVLAVAAKGRTRWSRAILTNRLKLKFRKPKRQRSASTAGNNRSKKPRVSVLRLRGKSLPAVQRKVRVLGRLVPGCRKEPLPVILEEATDYIAALEMQVRAMSALAELLSASTSAAGSSSAPPN | 202 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 2174973 | 2175581 | + | Cp4.1LG12g03270.1 | Cpe12g00330 | 478327 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe12g00330 | 202 | PANTHER | TRANSCRIPTION FACTOR BHLH148-LIKE ISOFORM X1 | 14 | 201 | - | - | |
| Cpe12g00330 | 202 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
| Cpe12g00330 | 202 | MobiDBLite | consensus disorder prediction | 104 | 127 | - | - | |
| Cpe12g00330 | 202 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 143 | 190 | IPR036638 | GO:0046983 | |
| Cpe12g00330 | 202 | CDD | bHLH_AtIBH1_like | 129 | 184 | IPR044549 | GO:0006355 | |
| Cpe12g00330 | 202 | PANTHER | TRANSCRIPTION FACTOR IBH1-LIKE 1 | 14 | 201 | IPR044660 | GO:0006355 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe12g00330 | Cpe-Chr12:2174973 | Cpe18g00019 | Cpe-Chr18:326926 | 1.05E-53 | dispersed | |
| Cpe11g00869 | Cpe-Chr11:7036864 | Cpe12g00330 | Cpe-Chr12:2174973 | 4.92E-45 | wgd | |
| Cpe12g00330 | Cpe-Chr12:2174973 | Cpe17g00075 | Cpe-Chr17:429216 | 5.43E-131 | wgd | |
| Cpe12g00330 | Cpe-Chr12:2174973 | Cpe03g01321 | Cpe-Chr3:10747008 | 1.24E-78 | wgd | |
| Cpe12g00330 | Cpe-Chr12:2174973 | Cpe08g00146 | Cpe-Chr8:956328 | 1.84E-80 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe12g00330 | - | - | csv:101220618 | 316.62 |