Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00332 ATCAATGTTAATTTCTTCCGCGACAGCGCGGGATTCCTCTTCTTCCTCCCGAGTCTGACTCCGTCTTGTCTTCGCGAAGGACTGCGCAAATTTGGCCTTCGATTTCTCAGTTCCGCAAAGCTGGATAGGCATAGAGAAGACCGCTATGGTTCCGACCAAGATTCCCACCCGTACCGTCACTCTGCAGCTCCTTCTCGCTTTTCGGACTCCCCGATGAACCATCAAGACAGTCGCTGGAGCCCCAATAACTTCCGTGGCGGCGTTGCCGGAGGTAACCGTCGGCCTTTCGACAGCCCGCCGCGCTTCTCTACTCCCGGTGCTGCTAATTTTCGCCCTATGGGAACTGGCGGGGGGTTCCGTCCAATTCCTGGTACTGGCGGTGGTTTTGGGTCCAGTTTCCAGCCGCCTCCTGTTGCAGGACAGAAACGGGGCTATCCTTTCGCCGGCCGTGGAAGTTCTCCAGATCATTCGGACAGAAGCAGTTTTGCGAAGCTGTTTGTTGGATCCGTTCCAAGGACAGTTACAGAAGAAGATATTCACCCATTGTTTGAAGAACATGGAAATGTGATTGAAGTAGCTTTGATAAAGGATAAGAGAACAGGCCAGCAACAAGGATGTTGTTTTGTAAAATATACAACCCCAGAAGAAGCTGATAGAGCAATTAGGAACTTGCACAATCAACATACCCTTCCTGGGGGAGCAGGCCCAATTCAAGTTCGATATGCTGATGGAGAGCAGGAGCGTCTCGGTGCAGTTGAGTTCAAATTGTTTGTTGGTTCACTAAATAAACAAGCCTCAGAAAAAGAAGTCAAGGAAATCTTTTCTCCATATGGAGTAGTTGACGATGTTTACCTTATGCGGGATGAAATGAAACAGAGTCGTGGGTGTGGATTTGTGAAGTATTCACAAAGGGATATGGCACTGGCGGCTATAAATGCACTTAATGGAAGGTTTACAATGGGAGGTTGTGATCAACCATTAAGCGTTCGCTTTGCTGACCCAAAGAAGCCTAGATCTGGAGATTCAAGGGGCACTCCTGCATTTGGAGGTCCGGGTTTTGGTTCTCGCTTTCAAGCACCTGGTCCGAGACCAATGCCTAATTTTGGTGAATTTATGGGTGATCGAGTTCCAATCGATGTACGAGGTTTCAGGCCACCTGTTGATGCTGGTGCTTTTCCCTTTGGGGGTCAGTTGCCTCCTAGGTCCAGTGAAATGGGACTGCCTTTGAACTTGGGTGGTCCTGGTAGTGGGTTTAGAGGTCCCAATCCTGGGTTAGCCTCTCCAGCATCCTCTGCTTCTCAACAGCCCGCACCTTCCCAAGAGTTACCTAGCATTGGTGCACAGTTTCCGGTATCTCAGGCTATGGTCCAGCCGGGTGCCTCATCAGCTGCAGCTACACAAACTCCTTTGAGTATGAACTTACAATCCCATGCTGCTGCCCCTAATCAACAGCAACGTCCTACACCGATTCAGCCACGGCAGAATTCACCTTCTCAGTTAGCACACATGTTGTCACAACAAAAACAAACTCTCCATGCTAGTTTTCAGTCTTCCCAGCAGGCATTCTCTCAGCTACAGCAGAAGTTGCAGTCGATACAACCATCAAATCAAAGCTCAATGTTGCAGCCGAGTTCCCGGACTATTAATCAGCAGTCTCACTGGACAGGGGTTGCGCCACACACAGCTACCAGTGCCACTTCTGCAACATCAGATACACATAAATCTACGGTTCCTCCTGTAGCTATAAATACCAGCAATTGGACAGAGCACACTTCTCCTGATGGTTATAAATACTATTATAATAGTGTTACTGGTGAGAGTAAGTGGGAGAGACCTCAAGAGCTTTCGGCGATCGAGCAACAACAAAAGCCACCAGTAATGCAGCCTCTTAACCAGTCACGTCCTCAACTACTACCTACCCAGCAACTCTCTCAAACTCCCCAAGCCCAGCTTCAAACTCGGTTCCAGACACCGACGCCCCACCCTCAGCCGCTACAGCAACCTTCATTCCATTCACAGGAAGGCACTTATACAAAATTGCAGACAGCTAATAGCTCGGTAAATGATCCTACTCGCTTCCACCAGATACCGGCGGCTCTTTTGTTTCATTACATCTTAGAAATTGGAGTTGAAGAGAAT 2139 48.9 INVNFFRDSAGFLFFLPSLTPSCLREGLRKFGLRFLSSAKLDRHREDRYGSDQDSHPYRHSAAPSRFSDSPMNHQDSRWSPNNFRGGVAGGNRRPFDSPPRFSTPGAANFRPMGTGGGFRPIPGTGGGFGSSFQPPPVAGQKRGYPFAGRGSSPDHSDRSSFAKLFVGSVPRTVTEEDIHPLFEEHGNVIEVALIKDKRTGQQQGCCFVKYTTPEEADRAIRNLHNQHTLPGGAGPIQVRYADGEQERLGAVEFKLFVGSLNKQASEKEVKEIFSPYGVVDDVYLMRDEMKQSRGCGFVKYSQRDMALAAINALNGRFTMGGCDQPLSVRFADPKKPRSGDSRGTPAFGGPGFGSRFQAPGPRPMPNFGEFMGDRVPIDVRGFRPPVDAGAFPFGGQLPPRSSEMGLPLNLGGPGSGFRGPNPGLASPASSASQQPAPSQELPSIGAQFPVSQAMVQPGASSAAATQTPLSMNLQSHAAAPNQQQRPTPIQPRQNSPSQLAHMLSQQKQTLHASFQSSQQAFSQLQQKLQSIQPSNQSSMLQPSSRTINQQSHWTGVAPHTATSATSATSDTHKSTVPPVAINTSNWTEHTSPDGYKYYYNSVTGESKWERPQELSAIEQQQKPPVMQPLNQSRPQLLPTQQLSQTPQAQLQTRFQTPTPHPQPLQQPSFHSQEGTYTKLQTANSSVNDPTRFHQIPAALLFHYILEIGVEEN 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2196254 2207031 - Cp4.1LG12g03390.1 Cpe12g00332 478329

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00332 713 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 163 244 IPR000504 GO:0003723
Cpe12g00332 713 CDD WW 585 614 IPR001202 GO:0005515
Cpe12g00332 713 Gene3D - 150 250 IPR012677 -
Cpe12g00332 713 CDD RRM2_FCA 255 334 IPR034645 -
Cpe12g00332 713 PANTHER RNA BINDING PROTEIN 430 652 - -
Cpe12g00332 713 Gene3D - 251 341 IPR012677 -
Cpe12g00332 713 SUPERFAMILY RNA-binding domain, RBD 254 359 IPR035979 GO:0003676
Cpe12g00332 713 PANTHER RNA BINDING PROTEIN 110 403 - -
Cpe12g00332 713 PANTHER FLOWERING TIME CONTROL PROTEIN FCA 110 403 - -
Cpe12g00332 713 MobiDBLite consensus disorder prediction 475 509 - -
Cpe12g00332 713 SMART ww_5 582 614 IPR001202 GO:0005515
Cpe12g00332 713 MobiDBLite consensus disorder prediction 46 100 - -
Cpe12g00332 713 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 256 321 IPR000504 GO:0003723
Cpe12g00332 713 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 165 228 IPR000504 GO:0003723
Cpe12g00332 713 PANTHER FLOWERING TIME CONTROL PROTEIN FCA 430 652 - -
Cpe12g00332 713 MobiDBLite consensus disorder prediction 333 363 - -
Cpe12g00332 713 Pfam WW domain 585 612 IPR001202 GO:0005515
Cpe12g00332 713 SUPERFAMILY WW domain 586 618 IPR036020 GO:0005515
Cpe12g00332 713 MobiDBLite consensus disorder prediction 66 82 - -
Cpe12g00332 713 ProSiteProfiles WW/rsp5/WWP domain profile. 585 614 IPR001202 GO:0005515
Cpe12g00332 713 SUPERFAMILY RNA-binding domain, RBD 146 248 IPR035979 GO:0003676
Cpe12g00332 713 MobiDBLite consensus disorder prediction 641 671 - -
Cpe12g00332 713 MobiDBLite consensus disorder prediction 526 551 - -
Cpe12g00332 713 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 254 334 IPR000504 GO:0003723
Cpe12g00332 713 MobiDBLite consensus disorder prediction 426 444 - -
Cpe12g00332 713 MobiDBLite consensus disorder prediction 391 444 - -
Cpe12g00332 713 Gene3D - 566 633 - -
Cpe12g00332 713 SMART rrm1_1 255 330 IPR000504 GO:0003723
Cpe12g00332 713 SMART rrm1_1 164 240 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00332 - - - cmos:111460217 958.362
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00332 Cpe17g00076 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00809 Cpe-Chr3:5041232 Cpe12g00332 Cpe-Chr12:2196254 1.54E-15 dispersed
Cpe12g00332 Cpe-Chr12:2196254 Cpe08g00113 Cpe-Chr8:728182 8.78E-23 dispersed
Cpe12g00976 Cpe-Chr12:8225662 Cpe12g00332 Cpe-Chr12:2196254 6.38E-50 transposed
Cpe12g00989 Cpe-Chr12:8312254 Cpe12g00332 Cpe-Chr12:2196254 5.57E-50 transposed
Cpe12g00332 Cpe-Chr12:2196254 Cpe17g00076 Cpe-Chr17:432623 0 wgd
Cpe12g00332 Cpe-Chr12:2196254 Cpe02g01533 Cpe-Chr2:13036035 3.35E-97 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g46 Blo01g00037 Blo12g00030 Bda03g01189 . Bpe04g01123 . Bma04g01118 Bma05g01000 . Cmo17g00369 . . . . . . . . . . . . . . Cla06g00417 Cam06g0439 Cec06g0445 Cco06g0444 Clacu06g0426 Cmu06g0425 Cre06g1204 . Cone15ag0721 . . . Csa06g01860 . . . . . . . . . . . . . . Cma17g00380 . Car17g00351 Cpe12g00332 Cpe17g00076 Bhi12g01943 . . . . . Lcy12g0865 . . . . . . . Lsi09g01506 . . Cme11g02092
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007086 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00332 Cpe_Chr12 FPKM 0.0 0.0 1.743264 1.693642 0.0 0.0 0.0 0.0 0.0 0.0