Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00336 ATGGCTCGTAAGGGTAACCAACAAAAAACAGGGTCAGAGCGCCATGTATCGAACAATAAAAAGAGAGGTTCAGACTTGCAGTCCAAGGGACAGGGGAGAGCACGAGAGATAAAGGTATTCCCCGGAGAGGGACTACCGAATGACAACCATCATAGTAGAGCCTTTGAGGAAGGTATGGTGAATAGAAACTCTGGGGAGGGTATAAAGAATCTAAAGAAATCTGAGAAGTCCTTGAGAAAAGAAAAACAAGGAGTGGAAGGATTTCATTCTCCAGACGAGCCAACATGTCTCCCCGAAGAATCCGGGAACTGCAATGGAAATAATGAGGATTCTAGTATAGGAGAACAGTACAATGGGTCTGATAAGGAGCGGGATCCTTTAGATGGTAGTTTCAGCTGCTTTTTGAACGGAGAACACATCAGAAATGTGATGGGTAATCTAAAATTTTCAGATAATGTTTTCGTGAAAAGCTTCGTGGAATCTATGTCATCGGTATTGGAAGCAGCCCATGTGTTGCTGGAGCAACAAAGACCTTTGTTTAATTCTATGAAGAACAACTTGCTAAACGCAAGTGCCTATGTTGGAAAGAAGATTATGAAAGCATATCCCATTGTTTTGAAATGGATGATGCATTTGGGGAATGTAATGCTTCTTTTATCAATTGTATGGTTGGACTGTGCCCTCAGGGGCATCGATTCCTTTGTACGTATGGGGACAACATCCTTCTTCTCAGTTATATGGTTCTCCATTCTTTCAACAATTGCAATGGTTGGAATTATTAAATTCCTTGTGATCTTGGTGGTAGCTGCTTCCCTTGGAATTTTTGTTGGGTTTGCTTTTGCAATTTTGGCCATCGCCATCTCTGGAGCAGCTTTCCTTTGGTTTTATGGAAACTTTTGGACAACAATGCTGATCATCTTTCTTGGAGGGCTGGCATTTATATTGAGCCATGAACGAGTTGCTCTCTTTATCACCACATTGTATTCGGTTTATTGTGTATGGGTATGCACTGGATGGTTTGGTTTGCTTTTGGGCCTGAATTTGTCATTTGTTTCAAGTGATGCTCTGATTTATTTCCTAAAGAACAACATAAATGAGCATAGGAGATCGAACAGATATCCTGAACAAACTGCTGGGATGCCAGATCAGCCTCGCTTCTTTCATGATGATCCTATGCAAGCATCATCTTCTGAATTTAGTGGTGCAGGCTTTGCTGCTGATCGGAGTTCAGGCACACCCTCAACCAGTGGAGCTGATTCTGAGCTATCTTCTGAAGATGAATTCATTCGTTTGCTGAATTGTACAGACCACTACGCAGTTTTGGGATTGTCTCGGTATGAGAATATGGATCCATCCCTACTCAAGAAGGAGTATAGGAGAAAGGCAATGTTGGTCCATCCTGATAAAAACATGGGGAATGAAAAGGCTGCTGAAGCATTTAAAAAACTTCAAAATGCATACGAGGTGTTACTTGATTCGACAAAGCGAAAAACCTATGATGATGAACTTAGAAGGGAAGAGCTGCTAAACATTTTCCGCAGGTTTCAGAGTGCTTCACGGAAGAGTGGAGGGAGTGGTCCATTTGCATTTTCACGTTCAACAACGGATAGAGAAGATCCTTTCGGTGAATCAAGACGAATAGCTTGCAAAAAGTGCAACAAATTTCATTTATGGAGATACACTAGCAAATCGAAATCTCAAGCTAGATGGTGCCAGGAATGCAAAGATTTTCATCAAGCAAAGGATGGAGATGGGTGGGTGGAGCAATCTTCCCAGCCTTTTCTTTTTGGATTGCTGCAGAAGGTAGATGCTCCTTCTGCCTACGTATGTGCAGATAGCCGAATATACGATGCTACTGGATGGTATATTTGTCAGGGAATGAGATGTCCAGCCAACACCCACAGGCCGAGTTTTCACGTAAACACAAGCGTAACCTCGAAGCAAAACACCAGAGGATCAAGTTCCAGCCAAAGAGGAGGCCAAATGCCTGCATCAAACATAGAAGAGAACATGACAGAAGAAGAATTCTTCGAGTGGTTTCAGAATGCCGTGCAGACAGGTGCGTTCGACAACGTCGGTGGCAGCAGCGCCACGGAGAGCTCACCTGCTAAAGCAGGAGGAAGTTTTAACAAAAGTAGTAGCAATAATAGTGGGAGTGGGAACAAGAAAAAGAAGAGGGGAAAGAAGTAG 2190 42.92 MARKGNQQKTGSERHVSNNKKRGSDLQSKGQGRAREIKVFPGEGLPNDNHHSRAFEEGMVNRNSGEGIKNLKKSEKSLRKEKQGVEGFHSPDEPTCLPEESGNCNGNNEDSSIGEQYNGSDKERDPLDGSFSCFLNGEHIRNVMGNLKFSDNVFVKSFVESMSSVLEAAHVLLEQQRPLFNSMKNNLLNASAYVGKKIMKAYPIVLKWMMHLGNVMLLLSIVWLDCALRGIDSFVRMGTTSFFSVIWFSILSTIAMVGIIKFLVILVVAASLGIFVGFAFAILAIAISGAAFLWFYGNFWTTMLIIFLGGLAFILSHERVALFITTLYSVYCVWVCTGWFGLLLGLNLSFVSSDALIYFLKNNINEHRRSNRYPEQTAGMPDQPRFFHDDPMQASSSEFSGAGFAADRSSGTPSTSGADSELSSEDEFIRLLNCTDHYAVLGLSRYENMDPSLLKKEYRRKAMLVHPDKNMGNEKAAEAFKKLQNAYEVLLDSTKRKTYDDELRREELLNIFRRFQSASRKSGGSGPFAFSRSTTDREDPFGESRRIACKKCNKFHLWRYTSKSKSQARWCQECKDFHQAKDGDGWVEQSSQPFLFGLLQKVDAPSAYVCADSRIYDATGWYICQGMRCPANTHRPSFHVNTSVTSKQNTRGSSSSQRGGQMPASNIEENMTEEEFFEWFQNAVQTGAFDNVGGSSATESSPAKAGGSFNKSSSNNSGSGNKKKKRGKK 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2223314 2230637 - Cp4.1LG12g03370.1 Cpe12g00336 478333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00336 729 ProSitePatterns Nt-dnaJ domain signature. 480 499 IPR018253 -
Cpe12g00336 729 PRINTS DnaJ domain signature 458 473 IPR001623 -
Cpe12g00336 729 PRINTS DnaJ domain signature 475 495 IPR001623 -
Cpe12g00336 729 MobiDBLite consensus disorder prediction 690 720 - -
Cpe12g00336 729 Gene3D DnaJ domain 429 517 IPR036869 -
Cpe12g00336 729 PANTHER OS03G0832900 PROTEIN 1 729 - -
Cpe12g00336 729 Pfam Cleavage inducing molecular chaperone 543 641 IPR032843 -
Cpe12g00336 729 MobiDBLite consensus disorder prediction 640 664 - -
Cpe12g00336 729 ProSiteProfiles dnaJ domain profile. 436 503 IPR001623 -
Cpe12g00336 729 MobiDBLite consensus disorder prediction 8 32 - -
Cpe12g00336 729 Pfam DnaJ domain 436 500 IPR001623 -
Cpe12g00336 729 SUPERFAMILY Chaperone J-domain 378 499 IPR036869 -
Cpe12g00336 729 MobiDBLite consensus disorder prediction 100 115 - -
Cpe12g00336 729 SMART dnaj_3 435 495 IPR001623 -
Cpe12g00336 729 MobiDBLite consensus disorder prediction 690 729 - -
Cpe12g00336 729 PANTHER OS03G0832900 PROTEIN 1 729 - -
Cpe12g00336 729 MobiDBLite consensus disorder prediction 1 123 - -
Cpe12g00336 729 MobiDBLite consensus disorder prediction 398 421 - -
Cpe12g00336 729 CDD DnaJ 436 492 IPR001623 -
Cpe12g00336 729 MobiDBLite consensus disorder prediction 68 88 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00336 K09534 DNAJC14; DnaJ homolog subfamily C member 14 - qsu:112036044 912.909
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00336 Cpe17g00081 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00569 Cpe-Chr1:3300820 Cpe12g00336 Cpe-Chr12:2223314 4.30E-109 dispersed
Cpe12g00336 Cpe-Chr12:2223314 Cpe14g00395 Cpe-Chr14:2440068 9.31E-87 dispersed
Cpe15g00608 Cpe-Chr15:6786942 Cpe12g00336 Cpe-Chr12:2223314 1.12E-08 dispersed
Cpe12g00336 Cpe-Chr12:2223314 Cpe17g00081 Cpe-Chr17:462260 6.65E-141 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g34 Blo01g00041 . . Bda08g00322 . . . Bma05g01008 Cmo08g01259 Cmo17g00374 . . . . . . . . . . . . . . Cla06g00411 Cam06g0434 Cec06g0440 Cco06g0439 Clacu06g0420 Cmu06g0420 Cre06g1199 . . . . . Csa06g01853 Chy11g01588 . . . . . Bpe05g00806 . . . Sed04g3077 . . Cma08g01294 Cma17g00385 Car08g01159 Car17g00355 Cpe12g00336 Cpe17g00081 Bhi12g01953 Tan06g2785 Cmetu11g0566 . . . Lcy12g0870 . . . . . . . . . . Cme11g02097
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008621 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 2 1 1 1 1 0 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00336 Cpe_Chr12 FPKM 109.585159 115.527924 79.168915 82.570198 157.747452 167.755386 154.680649 75.754036 77.052704 82.517502