Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00338 ATGTTCTTCACGGGCGATTCATCTACTCGCAAGCGAGTTGATTTAGGTGGCCGCAGTTCCAAGGAAAGAGATAGGCAGAAGCTTCTTGAGCAGACTAGATTGGAGCGAAACCGCCGATTGTCGTTGAGGCAGCAAAATTTTGCTGCTCTCAAAATTCAGAAATGCTTCAGAGGGAGAAAGGTATCTGAAGCTGCATGTTGTAGGATGCGAGAGCAATTTCATGATACTTATGGAAAGCATTGTGAGAAAGTTGACAGGCATTGTTTTGGTCCTGATTCAGAGTTTTTCCACCAGCTACTCTTTTTCTATAATGCAAAACACACCGGTGATTTTTCGGTTCTTGTAGAGGCTTGTCGGTTACTTCAGCAATTTGTTCGAGACAATGGGGACGTATTGAGCATCTTTGCTGGCAAGGATTATTTATCCAACAAGGCCTTAGTGGATTACAGAGTTAAGAAATTTGCATACGCTTGCATCCAGACAGTATATCATAATAGAAACCAATTGAGGAATCAACTTTTTGCTGCACCCGAGAACTCTAGCACACCTGCGACTCTATTGTTAGATGCAATTGTTTTCTTATTACAACCCGAACTCCCATGGGTTTGTAAGATTGTTGGCTACTTTCTGGAAAGAAATGCATATGTGCTGATTAGGGATATCACTTTGGCGGGGAAGGAAACTAAAGATTCGCATCCCAGCAGTTCAGTGCCTTCTTTAGAACGTTTGCTTTCTCTTTTGAGTTCTCATGTTGGTGAGAAGCCATGCTGTTGCCCACGTGTTGATCCCAATTGGAGCTTCTCCTCCCAAATTCTTACTCTTCCTTTACTGTGGCAGACATTCCCTTACTTAAAGGAGGTTTTCGCTAGACGGGGGTTGATTGGACATTACATTCATCAGATGGCATCATGTGTTCAACATTACGCAAATGTACTCCCAAAGGATGTAACAGCTGACATTCCTGGCTATGCATGCCTTCTTGGAAATGTATTAGAAATTTCCAGAACTGCTCTATCTCAGCCTGACTGCTCATCCGAATTGGCAGTAGATCTTGCTTCCATCACAACATTCTTGTTGGAACTACTTCCTTCGATGAAATCACCTCTTAGAGATATGGAAGAGAGTGCTGCATTGGGTGACGACGATGTGGTCGTGTCTGATCAAGAAATAGAGCTACCATTGAATAAAAATGTTGAGAAGCAGATATGTGATGCTATTGATCCACGATTTCTCCTGCAGTTGGCAAATGCTTTATTTGGGCAGATTTCCCAAGTTAGTGGGCCTTATGATGGTCCTGATGATAAAGAGGTCAAAGCTGTTGGTACAGCCTGTGCTTTTCTGCATGTCACTTTCAATACACTACCTCTGGAGCAAATTATGACCGTTCTAGCATACAGAACAGAGTTAGTTCCAGTACTTTGGAATTTTATAAAAAAGTGCCATGAGAACCAAAAATGGTCGTCCTTTTCGGAGAAGTTGGCATATTTATCAGGAGATGCACCTGGTTGGCTATTACCTTTGGCTGTTTTCTGTCCTGTGTACAAGCACATGTTGACAATAATTGACAATGAGGAGTTTTATGAGCAGGAGAAGCCACTATCATTAAAGGATATCAGATGTCTAATTATTATTTTGAGGCAGGCAAGTTTTCTTGAAAGCCACCTTGCCCTATGGCAGCTTTTATGGGTGAGTCCTACAGCTCCTAGTAATTCTGCAAAACCTGCCGCTACTGCCCATGTTACTAAGAGGCACACCGTTGAATTCATTCAATACAGGGTTACAATTGTTGCCTCAGAGCTCCTGTCACAGTTGCAAGACTGGAACAATAGACGGCAATTTACACCCCCCAGTGACTTCCATGCTGATGCCGTGAATGATTATTTCATTTCTCAGGCCGTGATAGAAAATACCAGAGCACATGATATACTTAAGCAAGCTCCCTTTTTAGTACCGTTTACAAGCAGGGTTAAGATTTTCACTTCACAACTAACAGCAGCTAGGCAAAGGAATGGATCTCATGCGGTTTTTGCTAGAAACCGGTTTAGAATTCGGCGAGATCATATATTGGAGGATGCTTTTAGTCAGATGAGTGCATTGTCTGAAGATGATCTTCGAGGATCGATACGTGTGTCATTTGTTAATGAATTTGGAGTTGAGGAGGCTGGAATTGATGGTGGTGGTATTTTCAAAGATTTCATGGAGAACATTACACGGGCAGCCTTTGATGTGCAGTATGGTTTATTTAAGGAAACAGCTGATCACTTGCTCTACCCCAATCCTGGTTCAGGAATGATACATGAGCAACATCTCCAATTTTTTCATTTCCTTGGAGTTCTTTTGGCTAAGCATTTTGAAGGGGACATTTCTGAACTGGAGCTATATTTTGTTATTATAAACAATGAATATGGAGAGCAAACAGAAGAAGAGCTACTCCCTGGAGGAAAAAACCGTCGTGTCACAAGTGAAAATGTCATCACATTCATTCATCTTGTTGCCAATCATCGTTTGAACTTTCAGATACGGCAGCAAAGTTCTCATTTCTTGAGAGGGTTTCAGCAACTTATACAGAAAGAATGGATCGATATGTTCAATGAACATGAATTCCAGCTTTTGATATCGGGTTCACTGGACGGCTTGGATGTGGATGACCTACGGACACATACTACTTATTCAAGTGGCTATCATAAAGAACATTATGTCATTGAGATGTTTTGGGAAGTTATCAAAAGTTTCTCAGTGGTAAACCAAAAGAAATTTCTGAAGTTTGTGACGGGTTGCTCTCGAGGACCGCTTCTTGGCTTTAGATATCTTGAGCCATGCTTTTGCATACAAAGGGCTGCTGGTAATGCAAATGAAGAAGCTCTTGATCGCTTACCTACATCAGCGACTTGTATGAATCTTTTGAAGCTTCCACCCTATAGAAGCAAGGAGCAACTGGCAAACAAATTGATGTATGCCATAAATGCAGATGCCGGTTTTGATCTAAGCTAA 2991 41.69 MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRKVSEAACCRMREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHTGDFSVLVEACRLLQQFVRDNGDVLSIFAGKDYLSNKALVDYRVKKFAYACIQTVYHNRNQLRNQLFAAPENSSTPATLLLDAIVFLLQPELPWVCKIVGYFLERNAYVLIRDITLAGKETKDSHPSSSVPSLERLLSLLSSHVGEKPCCCPRVDPNWSFSSQILTLPLLWQTFPYLKEVFARRGLIGHYIHQMASCVQHYANVLPKDVTADIPGYACLLGNVLEISRTALSQPDCSSELAVDLASITTFLLELLPSMKSPLRDMEESAALGDDDVVVSDQEIELPLNKNVEKQICDAIDPRFLLQLANALFGQISQVSGPYDGPDDKEVKAVGTACAFLHVTFNTLPLEQIMTVLAYRTELVPVLWNFIKKCHENQKWSSFSEKLAYLSGDAPGWLLPLAVFCPVYKHMLTIIDNEEFYEQEKPLSLKDIRCLIIILRQASFLESHLALWQLLWVSPTAPSNSAKPAATAHVTKRHTVEFIQYRVTIVASELLSQLQDWNNRRQFTPPSDFHADAVNDYFISQAVIENTRAHDILKQAPFLVPFTSRVKIFTSQLTAARQRNGSHAVFARNRFRIRRDHILEDAFSQMSALSEDDLRGSIRVSFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHLQFFHFLGVLLAKHFEGDISELELYFVIINNEYGEQTEEELLPGGKNRRVTSENVITFIHLVANHRLNFQIRQQSSHFLRGFQQLIQKEWIDMFNEHEFQLLISGSLDGLDVDDLRTHTTYSSGYHKEHYVIEMFWEVIKSFSVVNQKKFLKFVTGCSRGPLLGFRYLEPCFCIQRAAGNANEEALDRLPTSATCMNLLKLPPYRSKEQLANKLMYAINADAGFDLS 996
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2251607 2265769 + Cp4.1LG12g03340.1 Cpe12g00338 478335

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00338 996 CDD HECTc 679 994 IPR000569 GO:0004842
Cpe12g00338 996 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 1 784 IPR044611 GO:0000209|GO:0061630
Cpe12g00338 996 SMART hect_3 698 996 IPR000569 GO:0004842
Cpe12g00338 996 Gene3D Hect, E3 ligase catalytic domain 878 995 - -
Cpe12g00338 996 ProSiteProfiles HECT domain profile. 700 996 IPR000569 GO:0004842
Cpe12g00338 996 MobiDBLite consensus disorder prediction 1 24 - -
Cpe12g00338 996 Pfam HECT-domain (ubiquitin-transferase) 787 996 IPR000569 GO:0004842
Cpe12g00338 996 Gene3D Hect, E3 ligase catalytic domain 783 839 - -
Cpe12g00338 996 SUPERFAMILY Hect, E3 ligase catalytic domain 675 988 IPR035983 GO:0004842
Cpe12g00338 996 PANTHER BNAC01G43970D PROTEIN 782 996 - -
Cpe12g00338 996 PANTHER BNAC01G43970D PROTEIN 1 784 - -
Cpe12g00338 996 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 782 996 IPR044611 GO:0000209|GO:0061630
Cpe12g00338 996 Gene3D Hect, E3 ligase catalytic domains 840 874 - -
Cpe12g00338 996 Gene3D Hect, E3 ligase catalytic domains 681 782 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00338 K10589 UBE3C; ubiquitin-protein ligase E3 C [EC:2.3.2.26] - csv:101218340 1840.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g01059 Cpe-Chr8:8072529 Cpe12g00338 Cpe-Chr12:2251607 9.72E-75 dispersed
Cpe12g00338 Cpe-Chr12:2251607 Cpe14g00783 Cpe-Chr14:6167347 4.60E-55 dispersed
Cpe12g00338 Cpe-Chr12:2251607 Cpe08g00836 Cpe-Chr8:6644104 7.07E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g27 Blo01g00043 . . Bda08g00320 . . . Bma05g01010 . Cmo17g00376 . . . . . . . . . . . . . . Cla06g00408 Cam06g0430 Cec06g0437 Cco06g0436 Clacu06g0416 Cmu06g0416 Cre06g1196 . . . . . Csa06g01841 Chy11g01595 . . . . . Bpe05g00808 . . . Sed09g0619 . . . Cma17g00387 . Car17g00357 Cpe12g00338 . Bhi12g01956 Tan06g2787 Cmetu11g1561 . Hepe03g0028 . Lcy12g0884 . . . . . . . Lsi09g01511 . . Cme11g02100
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010669 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00338 Cpe_Chr12 FPKM 31.328964 34.855194 35.965981 39.948326 24.122271 25.975405 24.870962 30.876945 29.509598 39.322216