Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00339 ATGGTGAAGGTACGCATGAACACCGCCGATGTCGCCGCCGAGGTGAAATGCCTCCGAAAATTGATAGGCATGCGATGCGCCAATGTCTATGATCTCTCACCCAAGACATACATGTTCAAGCTTATGAACAGTAGTGGAGTCACTGAATCGGGTGAGAGTGAGAAGGTGTTGCTGTTGATGGAAAGTGGAGTCAGACTACATACGACGGAATATGTTCGAGACAAAAGCAATACTCCTTCTGGTTTCACTCTCAAACTAAGAAGGCATATACGCACAAGAAGACTTGAGGATGTGCGGCAACTTGGATATGATCGGATCATCCTATTTCAGTTTGGGTTAGGTGCTAGTGCACACTATGTTATCTTGGAGCTGTATGCCCAGGGTAATATCCTTCTTACGGATTCTGAATTTATGGTCTTAACTCTTCTTCGATCTCACAGGGATGATAATAAGGGGGTAGCAATCATGTCACGACATCGATATCCAACTGAAATTTCTCGAGTGTTTGAGCGGACGACAGCTGCAAAATTGCAGGAAGCACTCACTCTGGGTGACAATGCAGTTAACCTAACTGGTTACGAAAATAATGAAACAGATCCTTCAAAGCAACAGCCGGGTAACCACAAGGTCTCGAAGCCTTCTGTCTCAAGTAAAGCCCAAGGTGATGGCAGTCGAGCCAAACAGACTACTTTGAAAGCTGTTCTTGGGGAGGCACTGGGATATGGAACTGCGCTGTCTGAGCACATTATATTAAATGCCGGTCTGATTCCAAATATGAAACTTTGTAATGATAATAAACTTGACGATGGTAGTCTTCAGCTCTTAGTGCAAGCTGTTGCAAATTTTGAGGATTGGCTAGAGGATGTAATATTTGGTACTAGAGTTCCTGAAGGGTACATTTTGATGCAAAAGAAAAATGTTAAAAAAGAAGAATCTGAGGCTTCAACTGATAGTGAGATCTATGACGAGTTCTGCCCAATTTTATTAAACCAATTCATGTCTAGAAAGTATACAAAGTTCGAGACTTTTGATGCAGCTTTGGATGAATTCTACAGTAAAATTGAGAGTCAAAAGTCAGAACAGCAACAAAAGGCCAAGGAGAGCTCTGCGACTCAAAAACTCAATAAAATACGCATGGATCAGGGAAATCGTGTAGAGATATTAAAACAAGAAGTTGATCATTGTGTCAAAATGGCAGAATTAATAGAATACAATTTAGAAGATGTGGATGCTGTTATATTAGCCGTCCGTGTTGCTCTTGCTAAAGGCATGAGCTGGGAGGATCTTGCACGAATGGTGAAGGAAGAAAAGAAATCTGGAAATCCAGTGGCCGGTCTTATTGACAAACTTAATCTTGAAAGGAATTGCATGACTTTGCTGCTGAGCAACAATCTTGATGAAATGGATGATGATGAAAAGACACAACCAGCTGATAAGGTAGAGGTGGATATATCACTTTCAGCTCATGCCAATGCTCGGCGATGGTATGAACTTAAGAAAAAACAAGAGAGCAAACAGGAGAAAACTATTACTGCACATGAAAAAGCTTTTAAAGCTGCTGAAAGAAAAACTCGTCTTCAACTTTCCCAGGAAAAAAAAGTTGCCACAATATCTCATATGCGCAAAGTTCATTGGTTTGAGAAATTTAATTGGTTCATTAGCAGTGAGAATTATTTGGTTATCAGTGGACGTGATGCTCAGCAGAATGAGATGATAGTTAAACGTTACATGTCAAAGGGAGATTTGTATGTCCATGCTGATTTGCACGGAGCTTCTAGCACTGTGATTAGAAATCACAAGCCTGAACAACCAGTGCCTCCACTCACGTTGAACCAAGCAGGATGTTTTACGGTTTGTCATAGCCAGGCATGGGATTCAAAGATAGTCACTAGTGCCTGGTGGGTTTATCCTCACCAGGTTAGTAAAACTGCTCCTACAGGGGAATATCTTACAGTTGGGAGTTTTATGATTCGTGGAAAGAAGAATTTTCTTCCTCCACATGCTCTTGTCATGGGTTTTGGACTGTTATTTCGCTTGGATGAAAGCTCTTTAGGTTCACATTTAAATGAAAGGAGGGTAAGAGGTGAGGAGGATGGAGTGAATGATGTTGAAGAAAATGAACCTCTTAATGAAGAATCTGATACTGAATATGAGAAGAGGGAATCAGAAGAAGTATCCAACACATCTGCCAATTCAGATAGACTAGTTATAACGAACTTACCTGGACCTGAGGGCACTGAATCACTTGACATTCCCGTTGAAGGTAAAATGGCTTTGAATGGTGTCAATAAGGATAACCAACCTGATGTTACAGATAATGTTTCCCTTGTCACACCACAACTTGAAGATCTCATGGATAAAGCTCTTGAGCTTGGATCTGGCACTGCATCTAGCAAAAATTATATATTAGAGACTTCTAAGGTTGATTTGGTCGATGAACCCCATCCAGATGATAATAATGCTGCAGTGAGAGAGAAACCCTACATCTCAAAAGCTGAAAGAAGAAAACTTAAGAAAGGTCAGAATAGCAGTTCTACAGACAGTAACATCAAGCAGGAAACTGAGCAATCAAGAGATATTGATGTTTCTTTGAATCATCCTCCAAACAAGGTTAATAATCCGAAGTCAGGTTCTGTAAAAGTCAGCCGTGGTCAGAAGGGTAAACTGAAGAAAATGAAAGAAAAATATGCTGATCAAGATGAAGAAGAAAGAAGTATCCGCATGGCTTTATTGGCATCCTCAGGTAAGCTACCGAAAAATGAAGGGCCACAAAATGTGAAGGAAACAGCTTCTGAAGTGAAGAAACGTGATGGAGCTGCAAAAACTGCCATGAACCTGTTCGCGCACATGCCCGAAGCAACAACCAGAGAGAAAGAACTGATTAAAGCATGCACAGATCCAGAGTTGGTGAGCGCGATCATCGGGAATGCTCGGGTTACAGCGGCGGGTCTCACTCAGTTAAAGCAGAAGCAAAAAAAGGGAAAGAAAAGCAGCAAACAAGGAGCTGCTGCTAGCTAG 3018 41.39 MVKVRMNTADVAAEVKCLRKLIGMRCANVYDLSPKTYMFKLMNSSGVTESGESEKVLLLMESGVRLHTTEYVRDKSNTPSGFTLKLRRHIRTRRLEDVRQLGYDRIILFQFGLGASAHYVILELYAQGNILLTDSEFMVLTLLRSHRDDNKGVAIMSRHRYPTEISRVFERTTAAKLQEALTLGDNAVNLTGYENNETDPSKQQPGNHKVSKPSVSSKAQGDGSRAKQTTLKAVLGEALGYGTALSEHIILNAGLIPNMKLCNDNKLDDGSLQLLVQAVANFEDWLEDVIFGTRVPEGYILMQKKNVKKEESEASTDSEIYDEFCPILLNQFMSRKYTKFETFDAALDEFYSKIESQKSEQQQKAKESSATQKLNKIRMDQGNRVEILKQEVDHCVKMAELIEYNLEDVDAVILAVRVALAKGMSWEDLARMVKEEKKSGNPVAGLIDKLNLERNCMTLLLSNNLDEMDDDEKTQPADKVEVDISLSAHANARRWYELKKKQESKQEKTITAHEKAFKAAERKTRLQLSQEKKVATISHMRKVHWFEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKGDLYVHADLHGASSTVIRNHKPEQPVPPLTLNQAGCFTVCHSQAWDSKIVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHALVMGFGLLFRLDESSLGSHLNERRVRGEEDGVNDVEENEPLNEESDTEYEKRESEEVSNTSANSDRLVITNLPGPEGTESLDIPVEGKMALNGVNKDNQPDVTDNVSLVTPQLEDLMDKALELGSGTASSKNYILETSKVDLVDEPHPDDNNAAVREKPYISKAERRKLKKGQNSSSTDSNIKQETEQSRDIDVSLNHPPNKVNNPKSGSVKVSRGQKGKLKKMKEKYADQDEEERSIRMALLASSGKLPKNEGPQNVKETASEVKKRDGAAKTAMNLFAHMPEATTREKELIKACTDPELVSAIIGNARVTAAGLTQLKQKQKKGKKSSKQGAAAS 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2266842 2277240 + Cp4.1LG12g03350.1 Cpe12g00339 478336

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00339 1005 MobiDBLite consensus disorder prediction 810 938 - -
Cpe12g00339 1005 MobiDBLite consensus disorder prediction 861 880 - -
Cpe12g00339 1005 PANTHER NUCLEAR EXPORT MEDIATOR FACTOR NEMF 925 990 - -
Cpe12g00339 1005 PANTHER - 3 925 - -
Cpe12g00339 1005 PANTHER - 925 990 - -
Cpe12g00339 1005 MobiDBLite consensus disorder prediction 986 1005 - -
Cpe12g00339 1005 MobiDBLite consensus disorder prediction 713 727 - -
Cpe12g00339 1005 MobiDBLite consensus disorder prediction 891 907 - -
Cpe12g00339 1005 MobiDBLite consensus disorder prediction 191 227 - -
Cpe12g00339 1005 Gene3D ibrinogen binding protein from staphylococcus aureus domain 6 163 - -
Cpe12g00339 1005 MobiDBLite consensus disorder prediction 810 841 - -
Cpe12g00339 1005 MobiDBLite consensus disorder prediction 690 746 - -
Cpe12g00339 1005 Pfam NFACT protein RNA binding domain 548 659 IPR008532 -
Cpe12g00339 1005 Pfam NFACT N-terminal and middle domains 10 161 - -
Cpe12g00339 1005 Pfam NFACT N-terminal and middle domains 226 540 - -
Cpe12g00339 1005 PANTHER NUCLEAR EXPORT MEDIATOR FACTOR NEMF 3 925 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00339 K24971 NEMF, RQC2; nuclear export mediator factor NEMF - csv:101208866 1644.79
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g26 Blo01g00045 . . Bda08g00319 . . . Bma05g01011 . Cmo17g00377 . . . . . . . . . . . . . . Cla06g00407 Cam06g0429 Cec06g0436 Cco06g0435 Clacu06g0415 Cmu06g0415 Cre06g1195 . . . . . . Chy11g01596 . . . . . Bpe05g00809 . . . . . . . Cma17g00388 . Car17g00358 Cpe12g00339 . Bhi12g01957 . . . . . Lcy12g0885 . . . . . . . Lsi09g01512 . . Cme11g02101
Vvi5g212 . . . . . . . Bma05g01011 . . . . . . . . . . . . . . . . Cla06g00407 Cam06g0429 Cec06g0436 Cco06g0435 Clacu06g0415 Cmu06g0415 Cre06g1195 . . . . . . . . . . . . Bpe05g00809 . . . . . . . . . . Cpe12g00339 . Bhi12g01957 . . . . . Lcy12g0885 . . . . . . . Lsi09g01511 . . Cme11g02101
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009988 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 3 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00339 Cpe_Chr12 FPKM 1.994691 2.635475 3.566285 4.30944 14.025856 12.828701 12.23139 4.777004 4.55781 3.672973