Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00340 ATGAGCTCATTGGCGCATCAACTTTGTGGATTGAGGAGTTCCCCTCTTTCTTCAACGCCGATTTCAACTCGGAAGCGTTTTTCTCCGGTAGTTTCTGCTGCAGCTTCCCCTACTCCCATTTCCAATGCGCAGACCAAAGAGCGCCTTAAGCTCAAGCAACTCTTCAAGGAAGCTTATGAACGTTGCTGTATTACCCCCATGGATGGCGTCTCCTTCACGCTTGAGGACTTCCATGATGCTCTTGCCAATTACGACTTCGTTTCGGAACTCGGAACCAAGGTGAAAGGTACTGTATTCTCTACCGATGCTAATGGGGCACTAGTTGATACTTCTGCAAAGGGAACTGCATACTTGCCCACCCAAGAAGCATGCATTTTTAATATAAGACATGTAGAAGAAGCAGGCATATATCCTGGTTTAGAAGAGGAGTTTGTAATTATTGGTGAACAGGAACAGGAAGATGACGGCAGCCTAATTCTGAGCTTGAGAAGTGTCCAGTATGGCCTTGCTTGGGAGCGATGCAGACAACTTCAAGCTGAGGATTTTGTTATCAAGGGTATGGTTGTTGATGGAAACAAAGGTGGAGTAGTTGTTCTTGTGGAAGGCCTTAAAGGATTTGTTCCTTTCTCTCAAATATCAGCAAAATCAACTGCAGAGGAGCTGCTTAATAAAGAGCTACTTCTGAAGTTTGTGGAGGTTGATGAAAAACTATCTCGGCTAATCCTAAGTAATTCCAAGGCAATTGCCAGTAGCCAGTCAGAGCTAAAAATTGGGTCAGTAGTTACTGGAATTGTGCAGATTCTGAAACCATATGGAGCCTTCATTGACATCGGTGGAGTTAATGGGCTTCTTCATGTTAGTCAAATCAGTCAAAATCACATATCAGATATTGCAGCCGTTCTTCAACCAGGAGATATGCTAAAGGTCATGATTTTGAGCTATGACCGCGACCGAGGCCGTATTAGTCTTTCTACCAAGAAACTGGAACCTTCTCCTGGAGACATGCTTCACAATCCAAAGCTTGTTTTTGAGAAGGCGGACGAGATGGCTCAGACATTCAGGCAAAGAATAGCGCAAGCAGAAGCAATGGCTCGTGCAGAGCTTCTCGAATTTCAGCCTGAGAATTCATAG 1131 44.56 MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYERCCITPMDGVSFTLEDFHDALANYDFVSELGTKVKGTVFSTDANGALVDTSAKGTAYLPTQEACIFNIRHVEEAGIYPGLEEEFVIIGEQEQEDDGSLILSLRSVQYGLAWERCRQLQAEDFVIKGMVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLSRLILSNSKAIASSQSELKIGSVVTGIVQILKPYGAFIDIGGVNGLLHVSQISQNHISDIAAVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQAEAMARAELLEFQPENS 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2278701 2284005 + Cp4.1LG12g03330.1 Cpe12g00340 478337

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00340 376 Gene3D - 250 331 IPR012340 -
Cpe12g00340 376 Coils Coil 343 363 - -
Cpe12g00340 376 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 1 375 - -
Cpe12g00340 376 Gene3D - 74 174 IPR012340 -
Cpe12g00340 376 Gene3D - 175 249 IPR012340 -
Cpe12g00340 376 Pfam S1 RNA binding domain 255 326 IPR003029 GO:0003676
Cpe12g00340 376 Pfam S1 RNA binding domain 180 243 IPR003029 GO:0003676
Cpe12g00340 376 SUPERFAMILY Nucleic acid-binding proteins 177 247 IPR012340 -
Cpe12g00340 376 PANTHER 30S RIBOSOMAL PROTEIN S1 1 375 - -
Cpe12g00340 376 ProSiteProfiles S1 domain profile. 181 245 IPR003029 GO:0003676
Cpe12g00340 376 SUPERFAMILY Nucleic acid-binding proteins 251 332 IPR012340 -
Cpe12g00340 376 ProSiteProfiles S1 domain profile. 91 163 IPR003029 GO:0003676
Cpe12g00340 376 SUPERFAMILY Nucleic acid-binding proteins 89 189 IPR012340 -
Cpe12g00340 376 ProSiteProfiles S1 domain profile. 258 326 IPR003029 GO:0003676
Cpe12g00340 376 SMART S1_6 256 326 IPR022967 -
Cpe12g00340 376 SMART S1_6 179 245 IPR022967 -
Cpe12g00340 376 SMART S1_6 89 163 IPR022967 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00340 K02945 RP-S1, rpsA; small subunit ribosomal protein S1 - jre:109018700 514.998
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe08g00140 Cpe12g00340 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01231 Cpe-Chr3:9991539 Cpe12g00340 Cpe-Chr12:2278701 4.99E-14 dispersed
Cpe04g01113 Cpe-Chr4:9643359 Cpe12g00340 Cpe-Chr12:2278701 9.05E-11 dispersed
Cpe12g00340 Cpe-Chr12:2278701 Cpe13g00703 Cpe-Chr13:6545979 2.97E-17 dispersed
Cpe12g00340 Cpe-Chr12:2278701 Cpe08g00140 Cpe-Chr8:901992 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g25 Blo01g00046 . . Bda08g00318 . . . Bma05g01012 . Cmo17g00378 Cma06g01576 . Car06g01339 . Sed02g1123 Cpe08g00140 . Bhi01g01107 Tan10g1093 Cmetu03g1502 Lac11g1008 Hepe05g1360 . Lcy11g1322 Cla06g00406 Cam06g0428 . . Clacu06g0414 Cmu06g0414 Cre06g1194 . Cone15ag0714 Cone7ag0089 . Lsi05g01405 . . Cme06g00815 . . . . Bpe05g00810 . . . . Cmo06g01570 . . Cma17g00389 . Car17g00359 Cpe12g00340 . Bhi12g01965 Tan06g2800 . . . . Lcy12g0886 Cla05g00723 . . . . Cmu05g0745 . . Csa03g01535 Chy06g00772 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013392 0 1 0 0 0 1 1 0 0 0 1 1 1 0 1 1 1 0 1 1 0 0 1 1 1 0 1 1 11 0 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00340 Cpe_Chr12 FPKM 1.194853 1.225362 2.018435 1.548567 5.140631 3.950048 4.962465 1.313669 1.083402 1.230188