Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00342 ATGGCTACGAGCAACAACCTCCATGGCTCTGATTCTGTGAATGAAATGCTAATGGAATCGGCTAAAGAAGGATCTGGTCATATGAGTTCAGAGGGAAAGCCCAATGACACAGAAATAAAAGCGCGTGTCGATGCCATGTGGGAGCAAATGAATAAAGGGGTGTCTAGTAAAACACTAAAAGGTTTGTCAACCAAACGAAGTCCAGTGGTGAATAAAAACTCAAAGAAACCATCCAATAATTGGATTGCATATCTAGGTATGGCGTCAAAGAAGATTGAACCTCAAGAAAAAGATACATTATCTGAAGGACCCAAGGTTCTGCAGGACAGTTCTATGGATGATGCTAAGATGCTTGCTGCTACTGCTCTCTCAGCTGTTAGGGATGCTACAGCTACCATTTCCGGCAGGGGGAAAGTTGAGATCACAGAGATTAGGGACTTCGCAGGCCAAAATGTTGAAATTAAGAAGTTTGTAGATGCTGATTCAAAGGAAGCATACGAGAAGATGAAAGCACCTGCTAGTTCAGCTGTTGATGCAATCCTGGAACAAATCAAGAAGAAACAAAAGCTTAGTGTTCTTGACAAGACAAAAAAGGACTGGGGAGAGTTCAAGGAAGAAACCAAGGGGTTGGAAGAGGACTTGGATGCTTACAAGAAGAGCTCAAACCAGTATCTCGATAAAGTTTCGTTCTTGCAGCGAGCCGATTACAGGGAGTTTGAACGAGAGAGGGATGCACGGTTGGCTCTGCAGGCCAGGAGGAGGCCTGATATGCGAGAGGAGCCATGA 786 44.4 MATSNNLHGSDSVNEMLMESAKEGSGHMSSEGKPNDTEIKARVDAMWEQMNKGVSSKTLKGLSTKRSPVVNKNSKKPSNNWIAYLGMASKKIEPQEKDTLSEGPKVLQDSSMDDAKMLAATALSAVRDATATISGRGKVEITEIRDFAGQNVEIKKFVDADSKEAYEKMKAPASSAVDAILEQIKKKQKLSVLDKTKKDWGEFKEETKGLEEDLDAYKKSSNQYLDKVSFLQRADYREFERERDARLALQARRRPDMREEP 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2288619 2293003 + Cp4.1LG12g03420.1 Cpe12g00342 478339

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00342 261 Pfam Bucentaur or craniofacial development 175 248 IPR011421 -
Cpe12g00342 261 ProSiteProfiles Bucentaur C-terminal (BCNT-C) domain profile. 171 252 IPR011421 -
Cpe12g00342 261 MobiDBLite consensus disorder prediction 1 39 - -
Cpe12g00342 261 PANTHER SWR1-COMPLEX PROTEIN 5 28 260 - -
Cpe12g00342 261 PANTHER BUCENTAUR RELATED 28 260 IPR027124 -
Cpe12g00342 261 MobiDBLite consensus disorder prediction 53 75 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00342 - - - cpep:111806716 481.485
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00342 Cpe-Chr12:2288619 Cpe17g00083 Cpe-Chr17:473826 2.36E-144 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g217 Blo01g00027 . . . . . . Bma05g00989 . . . . . . . . . . . . . . . . Cla06g00404 Cam06g0426 Cec06g0434 Cco06g0433 Clacu06g0412 Cmu06g0412 Cre06g1192 Cone14ag0692 Cone15ag0706 . . . . . . . . . . Bpe05g00796 . . . . . . . . . . Cpe12g00342 . Bhi12g01968 . . . . . Lcy12g0888 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007922 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 1 1 1 2 0 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00342 Cpe_Chr12 FPKM 1.896667 1.35966 0.976469 0.363501 0.429077 0.09208 0.288323 1.424704 1.41557 1.401832