Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00344 ATGTACAGTGAAGGAGCCACCCCTGAGTTTATTTTTGATCAGGGTGTTTATTATCCTACTGCCGCCAATTATGGTTATTACTGTACAGGATTTGAATCACCTGGCGAATGGGAGGACCATTCTCGGATTTTTGGTTTAGATGGTCCAGATATCCAATACGCAGGTGCTCAAAATGAGAATTCATCTTATGTATATTATACGCCAAGCTATGGATATGCACAGTCTCAATACAACCCGTATAATCCTTACATACATGGTGCTGTGATAGGACCAGATGGTTCATATCTAGGGGCCCAACAATATTACACCATTCCTTCTTACGACAGCTCCGTTTCTTCTCCTGCTTATGTCCCTGTTATTGTCCAGCCAGATATTGTCCCCAATAGTTCCATCGGCTTGGTTGACCCTTCAATCAATAGATCGAATGGAAATGGAAGAATACAAAAAAATGAGAGTTCTGGAAGCTATTCTAGTAACCCCTCCAAACCTGCTGTAGACCAGAGAAATTCTTTTGCAAGGTTATCAGAAGTGCCAAGAGCAAATGTTGGTCCAAGTAAGCAAAGTTCAACACTTGGTAGCATTTCTGCTGGTAGTCATGCTGGATCAGTTTCATCACGCGTTTTTCAGGGTAGGGGTGCTTATGGTTCACTTCAACCAGTAGATGACATTTCAAATGGAAAGGTTGTGTCTCAACATAGTCAATTGAGAGTACCTCGTCCTATCAATAATGCATTTTCTGACTTTCGATCAAGTGCTCATGGACAGGCTGTGATCCCTAAACATCAGCCTAAGGTTCAAGTTGGTAGAGTTCTGGATGGTGCAAATGCTAATCCAGATGCTTTAAGTGAGCAGAATCGAGGTCCTAGAATCAGCAGATCTAAAACCCAACTTGTTCTGAAGGCCTACACAACCAAGGCTGGAGATGGTAATGCAGATGGAAACATTATTATCTACACAGATCAATATAATAAGGATGATTTTCCTATTGAATATGCGGATGCAAAATTTTTTGTAATAAAATCTTACAGTGAGGATGATGTTCACAAGAGCATTAAGTATAATGTTTGGTCGTCTACTTCCAATGGGAATAAGAAACTGAATTTTGCATACGAAGATGCACGGAGAATAGTTTCAGCAAAATCAAGAAGCTGTCCTGTATTCCTTTTTTTCTCTGTCAATGCTAGTGGTCAGTTCTGTGGTGTAGCAGAGATGGTTGGCCCTGTGGACTTCAACAGGGATATGGATTTCTGGCAGCAGGATAAATGGAATGGAAGCTTCCCTGTTAAGTGGCACATTATCAAAGATGTGCCAAACAACTACTTTAGGCATGTCATTTTGGAGAATAATGAGAACAAACCCGTTACTAATAGCAGAGATACTCAAGAGATACCGTTTAAAAAAGGTCTGGAGATGCTAAAATTATTCAAGAGTCATACATTAAAGACCTCTTTACTCGACGACTTCATTTATTATGAAAACCGTCAGAAGATCATGCAGGAGGAGAAAGCGAGGTTGGTTATTAGAAGGCTTGAGCGTCCATATTTTGTACCTGCATTAGATCATAGTCGACAGCTAAATTGTGTAATTGAGCTGCCTTTGAGAGATGATAAGAACCTCAACAAGACCAACGATGGTTCGAGGGTGTTGGAACGGAGTGTAGCCTCGAGAGCTGAGCAGCAGGTCTACTCAAATCCTGGCAATACTGGTGCTGTGGTAGTGAAGGAAAATCCCCCCAAGCACGATGATGGCGAAAAAGTTGATGTTTCGTCGACTCTGAAGATGGAATCTCTTGAAATTGGCCAGAAAGTGGCTGAGAAGCCTTTGGAGGGTGGTACACCAGCTGCTGCGAGTGATGCAAATTCCAAGCACGCTGAAGTTGTCACTGTAGGCTCAATGCCGATCGAAGTTAATGGATATAACACTGAACCTTCTGATGTTTTGACGGTGGGAACCATTCCGCTCGATCCAAAAGCTCTGCAGCTTTGCAAAGAAGATGCAGTTCTCAAAAATGGGGCTCAACAAAACTGA 2028 42.01 MYSEGATPEFIFDQGVYYPTAANYGYYCTGFESPGEWEDHSRIFGLDGPDIQYAGAQNENSSYVYYTPSYGYAQSQYNPYNPYIHGAVIGPDGSYLGAQQYYTIPSYDSSVSSPAYVPVIVQPDIVPNSSIGLVDPSINRSNGNGRIQKNESSGSYSSNPSKPAVDQRNSFARLSEVPRANVGPSKQSSTLGSISAGSHAGSVSSRVFQGRGAYGSLQPVDDISNGKVVSQHSQLRVPRPINNAFSDFRSSAHGQAVIPKHQPKVQVGRVLDGANANPDALSEQNRGPRISRSKTQLVLKAYTTKAGDGNADGNIIIYTDQYNKDDFPIEYADAKFFVIKSYSEDDVHKSIKYNVWSSTSNGNKKLNFAYEDARRIVSAKSRSCPVFLFFSVNASGQFCGVAEMVGPVDFNRDMDFWQQDKWNGSFPVKWHIIKDVPNNYFRHVILENNENKPVTNSRDTQEIPFKKGLEMLKLFKSHTLKTSLLDDFIYYENRQKIMQEEKARLVIRRLERPYFVPALDHSRQLNCVIELPLRDDKNLNKTNDGSRVLERSVASRAEQQVYSNPGNTGAVVVKENPPKHDDGEKVDVSSTLKMESLEIGQKVAEKPLEGGTPAAASDANSKHAEVVTVGSMPIEVNGYNTEPSDVLTVGTIPLDPKALQLCKEDAVLKNGAQQN 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2300766 2305218 - Cp4.1LG12g03450.1 Cpe12g00344 478341

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00344 675 MobiDBLite consensus disorder prediction 181 197 - -
Cpe12g00344 675 MobiDBLite consensus disorder prediction 131 197 - -
Cpe12g00344 675 Pfam YT521-B-like domain 334 476 IPR007275 GO:0003723
Cpe12g00344 675 PANTHER OS03G0317000 PROTEIN 1 657 - -
Cpe12g00344 675 MobiDBLite consensus disorder prediction 132 168 - -
Cpe12g00344 675 ProSiteProfiles YTH domain profile. 334 475 IPR007275 GO:0003723
Cpe12g00344 675 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 1 657 IPR045168 -
Cpe12g00344 675 Gene3D ph1033 like domains 316 490 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00344 K20102 YTHDF; YTH domain-containing family protein - csv:101206750 1218.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00730 Cpe-Chr9:6703501 Cpe12g00344 Cpe-Chr12:2300766 1.21E-11 dispersed
Cpe12g00344 Cpe-Chr12:2300766 Cpe18g00273 Cpe-Chr18:4339566 5.02E-88 dispersed
Cpe12g00344 Cpe-Chr12:2300766 Cpe17g00087 Cpe-Chr17:496867 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g227 . . . . . Bpe14g01080 . . . . . . . . . . . . . . . . . . Cla06g00400 Cam06g0422 Cec06g0429 Cco06g0429 Clacu06g0408 Cmu06g0408 Cre06g1188 Cone14ag0687 Cone15ag0700 . . . . . . . . . . . . Bma02g00945 . Sed08g1182 . . . . . . Cpe12g00344 . Bhi12g01981 Tan06g2807 Cmetu02g1103 . . . Lcy12g0894 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004548 2 2 2 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00344 Cpe_Chr12 FPKM 12.032073 12.348051 14.050385 10.401014 32.230328 33.116253 31.847586 1.304937 0.761715 0.0