Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00347 ATGGCTGCCTTCTCCTTCTCCTTCTCCTCTTCGCTCCTTCCTTCATCAGTTTCTTTCGATCATGGCTCCTCTTCCTTCTTCCCCATCCTTATTTCATCTTCTTTCGACTCCAATTCTCGCGTTGTTCGCTGTACATTTGCAGCCCCCGCTAGAAAATCGCCTCCTCCTCCTTCTTCTTCTTCTTCTTCCTCACCGGATAAGAAGAGGCACTGGAAGCAAGGGGAATTTCCAGGTATTACGGAGACATCCGCCCCCAGGATGACCCCCGCTAGAAAATCACCTCCTCCTTCTTCTTCGTCGCCGGTTAAGAAGAAGCATTGGAAACAAGGGGAATTTCCAGGCGTTACAGAGAGATTCGACGCCAGGAAGACCCCTCTCAAGAATGTCAAGAAGAAATTAGATCGCAAAATGAACGCCAAAGCTTGGGCTAACACCGTTACTGAAACCTTGTCGGAACATATCACGAACAAACGGTGGATTCAAGCTCTTGAGCTGCTTGTTCTTCTTGGAAGATCTGGCCAACCACAGCGTGCCCGTCTGCTTTTTGACACAATGGTGGAAGAAAAATGTGAACCCACCACTGAACTTTACACTGCTTTGCTTGCTGCTTATTGTCGTAACAATCTCATTGATGATGCATTTTCCATTCTTAATCTCATGAAAACCCTCCCTTGCTGCCAGCCTGATATCTACACTTATAGTATATTAATCAAGGCTTGTGTCGATTCTTCTCGCTTTGAATTAGTTGAATCTTTGTACGAGGAAATGGCCGAACGACTGATAACTCCGAACACGGTTACTCAGAATATAGTCTTAAGTGGATATGGCAAGATAGGGAAGTATGACCAGATGGAGAAAGTTCTTTTAGGAATGCTTGAGAGCACAACTTGTAGACCAGATGTGTGGACAATGAACATAATTCTTAGTGTGTTTGGTAACAAGGGTCAGATTGAAATGATGGAAAGATGGTACGAGAAGTTTCGCAACTTCGGTATCGAGCCAGAAACACGTACATTCAATATTTTGATTGGTGCTTATGGGAAGAAAAGGATGTATGATAAAATGTCTTCTGTGATGGAGTATATGCGCAAACTGCAGTTTCCTTGGACGACCTCGACATACAACAACGTTATTGAAGCTTTTGCAGATGTGGGAGATGCAAAGAATATGGAGTACACCTTCACGCAGATGCGTGCTGAGGGCATGAAAGCAGACACCAAGACATTCTGTTGCCTTATAAATGGATATTCCAATGCAGGTCTCTTCCATAAGGTGATTGGCTCAGTTAAGTTGGCAGGAAAGTGTGAAATTCCAGAGAATACCTCATTTTATAATGCTGTTATATCTGCTTGTGCAAAGGCTGAGGATCTGATGGAAATGGATAGAGTGTTTAAGCGAATGAAAGATAAACATTGTCAGCCAGATAGCAAAACATATTCTATCATGATAGAAGCATATGAAAAGGAGGCCATGAATGACAGAGTTCATTACTTGGAACTGGAAAGGAAGCAGGCGAACTTGCTCGTTGTTCGGGACAAAACGGCGAACAGGGAAAAA 1557 43.61 MAAFSFSFSSSLLPSSVSFDHGSSSFFPILISSSFDSNSRVVRCTFAAPARKSPPPPSSSSSSSPDKKRHWKQGEFPGITETSAPRMTPARKSPPPSSSSPVKKKHWKQGEFPGVTERFDARKTPLKNVKKKLDRKMNAKAWANTVTETLSEHITNKRWIQALELLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNNLIDDAFSILNLMKTLPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQMRAEGMKADTKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIPENTSFYNAVISACAKAEDLMEMDRVFKRMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYLELERKQANLLVVRDKTANREK 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2344586 2347731 - Cp4.1LG12g03500.1 Cpe12g00347 478344

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00347 519 Pfam Pentatricopeptide repeat domain 369 416 IPR002885 -
Cpe12g00347 519 Pfam PPR repeat family 192 241 IPR002885 -
Cpe12g00347 519 Pfam PPR repeat family 440 486 IPR002885 -
Cpe12g00347 519 Pfam PPR repeat family 299 346 IPR002885 -
Cpe12g00347 519 MobiDBLite consensus disorder prediction 47 114 - -
Cpe12g00347 519 PANTHER ATPASE EXPRESSION PROTEIN 3 98 165 - -
Cpe12g00347 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Cpe12g00347 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 193 227 IPR002885 -
Cpe12g00347 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Cpe12g00347 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Cpe12g00347 519 PANTHER ATPASE EXPRESSION PROTEIN 3 164 505 - -
Cpe12g00347 519 Gene3D Tetratricopeptide repeat domain 293 365 IPR011990 GO:0005515
Cpe12g00347 519 Gene3D Tetratricopeptide repeat domain 429 506 IPR011990 GO:0005515
Cpe12g00347 519 Gene3D Tetratricopeptide repeat domain 366 428 IPR011990 GO:0005515
Cpe12g00347 519 TIGRFAM PPR: pentatricopeptide repeat domain 168 193 IPR002885 -
Cpe12g00347 519 TIGRFAM PPR: pentatricopeptide repeat domain 196 229 IPR002885 -
Cpe12g00347 519 TIGRFAM PPR: pentatricopeptide repeat domain 231 264 IPR002885 -
Cpe12g00347 519 TIGRFAM PPR: pentatricopeptide repeat domain 303 334 IPR002885 -
Cpe12g00347 519 TIGRFAM PPR: pentatricopeptide repeat domain 266 300 IPR002885 -
Cpe12g00347 519 TIGRFAM PPR: pentatricopeptide repeat domain 444 476 IPR002885 -
Cpe12g00347 519 TIGRFAM PPR: pentatricopeptide repeat domain 373 405 IPR002885 -
Cpe12g00347 519 TIGRFAM PPR: pentatricopeptide repeat domain 338 366 IPR002885 -
Cpe12g00347 519 Gene3D Tetratricopeptide repeat domain 141 292 IPR011990 GO:0005515
Cpe12g00347 519 PANTHER OS03G0309800 PROTEIN 164 505 - -
Cpe12g00347 519 Pfam PPR repeat 269 293 IPR002885 -
Cpe12g00347 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Cpe12g00347 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 299 IPR002885 -
Cpe12g00347 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 440 474 IPR002885 -
Cpe12g00347 519 PANTHER OS03G0309800 PROTEIN 98 165 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00347 - - - cmax:111499248 940.643
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00347 Cpe-Chr12:2344586 Cpe12g01081 Cpe-Chr12:8975615 1.68E-17 dispersed
Cpe12g00347 Cpe-Chr12:2344586 Cpe17g00089 Cpe-Chr17:516740 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g249 . Blo12g00376 Bda03g00833 . Bpe04g00789 . Bma04g00732 . . . . . . . . . . . . . . . . . Cla06g00396 Cam06g0417 Cec06g0425 Cco06g0425 Clacu06g0404 Cmu06g0404 Cre06g1183 Cone14ag0683 Cone15ag0695 . . . . . . . . . . . . . . Sed09g0597 . . . . . . Cpe12g00347 . Bhi12g01993 Tan06g2812 Cmetu11g0485 Lac11g1038 Hepe03g0014 . Lcy12g0899 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008423 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 0 2 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00347 Cpe_Chr12 FPKM 1.21087 1.566723 1.053417 1.231639 0.717932 0.614819 1.291442 1.753617 1.321694 2.121001