Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00348 ATGGCGCCTGATCTAAACACAACACTTTCCAAGAAGACGTTTGTTTTTGGTATGAAGGTATGGGTGTTTACTGGAGTCTTGGTGGGGGTGTTTATTGTAATAGTCCTTGTGGTGCTATCAATATGTGTTACTTCAAGAAGAAAGTCTAGAAGGGTAAGTGGCATGCTTCCTCTCAGCCGTATTTCCATTGCATCAAAGGAAATCAAGGAGATTGGGGTGGATCATGTTTCAGCAATCCAGCAGGGCCCCCGCCCCCATGATGGAATCGAAACGGAATCAGAAAAGGTTCTGCTATATTCAAACAAGGCCTACGATTACAGCATATCAGGCTCAGATGATCACACAGAGATATATGCTATTGGTTCTGGAGAAGGAAGCAAGGAAGCAAGTGCTTTGCATAGACCCTCAGATTCAATACCACCGGACACTTCGCCACTGGCTGGTCTGCCGGATTTCGCGCAACTGGGATGGGGTCACTGGTTCACCTTAAGAGATCTGGAACTTGCAACAATGCATTTTTCAAACGATAATATAATTGGGGAGGGAGGATATGGAGTTGTGTATCGAGGTCAACTTATGAATGGGACACCTGTGGCTGTCAAAAAGCTTCTAAATGTAGTGGAAGTAGAAGCGTTTGGGCATGTGAGGCATAAGAACCTAGTTAGGCTGCTGGGATACTGCATTGAAGGAACACACAGGATATTAGTATATGAGTATGTGGACAATGGAAATCTAGAGCAGTGGCTTCACGGAGCTTTAAGCCAGTATGGATATCTCACTTGGGAAGCCCGAATCAAAATTCTCCTTGGTACTGCTAAGGCATATGTGGCACCAGAATATGCCAAATCTGGGCTTCTAAACGAGAAGAGCGATGTTTATAGTTTTGGAGTGGTAAATTTGGTAGATTGGCTAAAGATGATGGTAGGAAGCAAACGATCAGAAGAGGTGGTAGACCCAAACATAGAGAGAAAGCCATCAGTTAGTGAACTAAAGCGAGCTCTTTTAACTGCTTTGAGGTGTGTGGATCCAGATTCTGATAAGAGGCCTAAGATGAGCCAAGTGGCCAGAATGCTCAACTCCGAGGAAAATCCAATTCCTCGACAGGATCGGAGACCCAGAAAGGGCCATGCTGCTGCGACCAAAATGGAGTCTGGGAAACAGGAGAGAGGACCCAGAAGACACAAATAA 1188 45.2 MAPDLNTTLSKKTFVFGMKVWVFTGVLVGVFIVIVLVVLSICVTSRRKSRRVSGMLPLSRISIASKEIKEIGVDHVSAIQQGPRPHDGIETESEKVLLYSNKAYDYSISGSDDHTEIYAIGSGEGSKEASALHRPSDSIPPDTSPLAGLPDFAQLGWGHWFTLRDLELATMHFSNDNIIGEGGYGVVYRGQLMNGTPVAVKKLLNVVEVEAFGHVRHKNLVRLLGYCIEGTHRILVYEYVDNGNLEQWLHGALSQYGYLTWEARIKILLGTAKAYVAPEYAKSGLLNEKSDVYSFGVVNLVDWLKMMVGSKRSEEVVDPNIERKPSVSELKRALLTALRCVDPDSDKRPKMSQVARMLNSEENPIPRQDRRPRKGHAAATKMESGKQERGPRRHK 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2348377 2352926 - Cp4.1LG12g03460.1 Cpe12g00348 478345

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00348 395 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 2 274 - -
Cpe12g00348 395 Gene3D Phosphorylase Kinase; domain 1 157 239 - -
Cpe12g00348 395 Pfam Protein tyrosine and serine/threonine kinase 176 272 IPR001245 GO:0004672|GO:0006468
Cpe12g00348 395 SUPERFAMILY Protein kinase-like (PK-like) 157 366 IPR011009 -
Cpe12g00348 395 PANTHER OS01G0323000 PROTEIN 2 274 - -
Cpe12g00348 395 MobiDBLite consensus disorder prediction 342 395 - -
Cpe12g00348 395 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 275 388 - -
Cpe12g00348 395 PANTHER OS01G0323000 PROTEIN 275 388 - -
Cpe12g00348 395 ProSiteProfiles Protein kinase domain profile. 173 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe12g00348 395 MobiDBLite consensus disorder prediction 363 389 - -
Cpe12g00348 395 ProSitePatterns Protein kinases ATP-binding region signature. 179 202 IPR017441 GO:0005524
Cpe12g00348 395 Gene3D Transferase(Phosphotransferase) domain 1 272 374 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00348 - - - csv:101204202 514.612
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00850 Cpe-Chr4:7847421 Cpe12g00348 Cpe-Chr12:2348377 2.83E-136 dispersed
Cpe05g01549 Cpe-Chr5:10641832 Cpe12g00348 Cpe-Chr12:2348377 6.52E-112 dispersed
Cpe12g00348 Cpe-Chr12:2348377 Cpe16g00727 Cpe-Chr16:7384870 1.27E-128 dispersed
Cpe11g00858 Cpe-Chr11:6979545 Cpe12g00348 Cpe-Chr12:2348377 6.03E-95 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g253 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00395 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe12g00348 . Bhi12g01995 . . . . . Lcy12g0901 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002371 3 2 2 2 2 0 2 0 0 2 2 0 2 2 0 2 0 0 2 0 1 0 0 0 0 2 0 0 0 2 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62748 PF07714 PK_Tyr_Ser-Thr 7.20E-11 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00348 Cpe_Chr12 FPKM 86.3452 93.774834 77.135826 77.282974 116.454124 129.696426 122.208817 117.615356 124.026611 120.040398