Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00349 ATGACCAGCGGCTTGCAGATGAATCCTCAGTTAGAGCAGATCCATGGTGAAATTCGTGACAATTTTCGGGCGCTTTCAAATGGGTTTCAAAGACTGGATAATATCAGAGATTCCAGTAGACAAAGTAAGCAGTTGGAGGAGCTCACAGGAAAGATGAGAGAATGTAAAAGATTAATTAAAGATTTTGACCGTGAACTCAAGGATGAAGAGAGTAAAAATCCACCGGAAGTGAATAAGCAGCTCAACGATGAGAAGCAATCAATGATTAAAGAGCTGAATTCATTTGTTGCACTGAGGAAAACGTACGTGAATAGTCTTGGAAATAAAAGAGTTGAGCTATTTGATGAGGGAGGTGTAAGCGAACCTACTGCTGATAATAATGTTCAGATGGCCTCATCTATGACAAATCAAGAACTTATGGATGCTGGGAAGAAAACAATGGATGAGACCGATCAGGCTATTGAACGCACTAAAAAGGTGGTTGAACAAACTATTGAAGTTGGAACTCAAACTGCTGTTACATTAAAAGGCCAAACTGATCAAATGGGCCGTATAGTAAATGAGCTCGACACGATTAATTTTTCGATTAAGAAGGCTTCCCAGCTCGTGAAGGAAATTGGCAGACAGGTTGCTACAGACAAATGCATCATGCTGTTTCTGTTCCTAATTGTTTGTGGAGTGATAGCCATAATCGTTGTTAAGATTGTGAACCCCAACAACAAAGACATCAGGGATATTCCTGGATTGGCACCGCCCGTTCCCGCCAGGAGGCTTTTGTATCTGAGGACACCTGAACATTTCGAGTAA 807 41.26 MTSGLQMNPQLEQIHGEIRDNFRALSNGFQRLDNIRDSSRQSKQLEELTGKMRECKRLIKDFDRELKDEESKNPPEVNKQLNDEKQSMIKELNSFVALRKTYVNSLGNKRVELFDEGGVSEPTADNNVQMASSMTNQELMDAGKKTMDETDQAIERTKKVVEQTIEVGTQTAVTLKGQTDQMGRIVNELDTINFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPVPARRLLYLRTPEHFE 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2357650 2364697 - Cp4.1LG12g03470.1 Cpe12g00349 478346

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00349 268 Gene3D - 135 214 - -
Cpe12g00349 268 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 144 206 IPR000727 -
Cpe12g00349 268 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 1 254 - -
Cpe12g00349 268 Pfam Sec20 152 229 IPR005606 GO:0005484|GO:0006890
Cpe12g00349 268 CDD SNARE_SNAP25N_23N_29N_SEC9N 143 205 IPR044766 GO:0005484|GO:0031201
Cpe12g00349 268 SUPERFAMILY SNARE fusion complex 134 207 - -
Cpe12g00349 268 PANTHER BNAA01G36970D PROTEIN 1 254 - -
Cpe12g00349 268 Coils Coil 45 72 - -
Cpe12g00349 268 SMART tSNARE_6 139 206 IPR000727 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00349 K08494 NSPN; novel plant SNARE - csv:101206271 492.271
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00700 Cpe-Chr8:5448272 Cpe12g00349 Cpe-Chr12:2357650 1.75E-84 dispersed
Cpe12g00349 Cpe-Chr12:2357650 Cpe14g00906 Cpe-Chr14:7622538 5.37E-110 dispersed
Cpe12g00349 Cpe-Chr12:2357650 Cpe17g00090 Cpe-Chr17:520332 5.12E-163 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g255 Blo01g00024 Blo12g00374 Bda03g00835 . Bpe04g00791 . Bma04g00734 Bma05g00986 . . . . . . . . . . . . . . . . Cla06g00393 Cam06g0415 Cec06g0423 Cco06g0423 Clacu06g0402 Cmu06g0402 Cre06g1181 Cone14ag0681 Cone15ag0693 . . . . . . . . . . . . . . . . . . . . . Cpe12g00349 . Bhi12g01996 . . . Hepe03g0009 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001212 4 4 3 3 2 2 6 2 2 2 2 2 3 3 2 3 2 4 3 2 2 2 2 2 2 2 2 2 2 2 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00349 Cpe_Chr12 FPKM 7.922146 9.118098 8.153278 7.024832 5.7202 5.158395 6.677696 13.266479 15.573753 18.67642