Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00351 ATGAGTTGCTGGGCGGTGGGTTCGGCGGTTCTTCCTTCCGTTCCCCGTCCTCTTTCACCAATTCCATCTCGAAATGGAGATTCACCTTCCACCGGTCGTGGATTTCCGATTTCGGAGGATTCTTCTTGTGTTACAGAGCCCGATTTCCCCAGCTTCAAATGGCGGTTGGTCGTTGCTTATGATGGCACCCGATATGCAGGTTGGCAATATCAGCGGTCACCACCTACTATTCAGTGCCTCATTGAAGAAGCCTTGACCGGAGCAACAAGGCTTGAGAGGAAGGATCTCCATTTAGTTGGTGCAAGCAGAACAGATACGGGAGTTCATGCCTGGGGTCAGGTGGCTCACTTTATTACACCATTTAACTACGACAGCTTGGACAGAATTCATGCTGCTCTGAATGGTCTTCTTCCTGCGGATATAAGAGTTCGAGAGATCAGTCCTGCTGTGCCTGACTTTCATGCTCGGTTTTCTACATTAAGCAAGGTTTATCACTACAAGATATATAATGACGCCATCTTGGATCCATTTCAGCGTTGCTACACTTACCATTGTGTTTATAAACTCAATTATGCAGCCATGAAAGAGGCTGCAAATTATTTCGTTGGAAAGCATGATTTTTCTGCCTTTGCTAATGCAGCGCATAATGATCGAGTGGGAGCTCTTATTCAGCTAGAAGTTGAGGGTTCTGGGTTCCTGTATAGACAAGTTCGGAATATGGTTGCCTTGTTGCTTCAAATTGGAAAAGAAGCAATTCCTCCTGACGTTGTTCCTAAGATTTTGGCTACTCGAGATCGCAAGGAGCTTGCCAAGTATACGACGTGCATTCCTCCTCATGGTCTCTGTCTCGTGAGAATTAATTATAAAGAGGACCATTTAAAGCTTCCATCTGATTGCCCTGGGACTAGTTTTGGCAGGAGTCATAGTGTGAGTAAATGTAAGCTCCCTTTTTATTGA 957 45.45 MSCWAVGSAVLPSVPRPLSPIPSRNGDSPSTGRGFPISEDSSCVTEPDFPSFKWRLVVAYDGTRYAGWQYQRSPPTIQCLIEEALTGATRLERKDLHLVGASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREISPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEAANYFVGKHDFSAFANAAHNDRVGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDVVPKILATRDRKELAKYTTCIPPHGLCLVRINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2393010 2395959 + Cp4.1LG12g03520.1 Cpe12g00351 478348

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00351 318 SUPERFAMILY Pseudouridine synthase 52 294 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cpe12g00351 318 TIGRFAM hisT_truA: tRNA pseudouridine(38-40) synthase 56 272 IPR001406 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cpe12g00351 318 PANTHER TRNA PSEUDOURIDINE SYNTHASE-LIKE 1 51 301 - -
Cpe12g00351 318 Gene3D - 51 159 IPR020094 GO:0003723|GO:0009982
Cpe12g00351 318 Pfam tRNA pseudouridine synthase 197 288 IPR020097 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cpe12g00351 318 Pfam tRNA pseudouridine synthase 58 157 IPR020097 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cpe12g00351 318 PANTHER PSEUDOURIDYLATE SYNTHASE 51 301 IPR001406 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cpe12g00351 318 MobiDBLite consensus disorder prediction 16 39 - -
Cpe12g00351 318 MobiDBLite consensus disorder prediction 23 38 - -
Cpe12g00351 318 Hamap tRNA pseudouridine synthase A [truA]. 52 288 IPR001406 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cpe12g00351 318 CDD PseudoU_synth_EcTruA 56 288 IPR001406 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cpe12g00351 318 Gene3D - 161 291 IPR020095 GO:0003723|GO:0009982
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00351 K06173 truA, PUS1; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] - csv:101205797 552.362
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01644 Cpe-Chr1:10072495 Cpe12g00351 Cpe-Chr12:2393010 3.75E-09 dispersed
Cpe12g00351 Cpe-Chr12:2393010 Cpe13g00708 Cpe-Chr13:6576434 3.97E-15 dispersed
Cpe12g00351 Cpe-Chr12:2393010 Cpe04g01353 Cpe-Chr4:11037625 2.90E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g264 Blo01g00018 . . Bda08g00342 . . . Bma05g00982 . . . . . . . . . . . . . . . . Cla06g00388 Cam06g0410 Cec06g0419 Cco06g0418 Clacu06g0398 Cmu06g0397 Cre06g1174 Cone14ag0674 Cone15ag0685 . . . . . . . . . . Bpe05g00791 . . . Sed06g1479 . . . . . . Cpe12g00351 . Bhi12g02002 Tan06g2820 Cmetu10g0038 . Hepe03g0005 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005575 1 3 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 5 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00351 Cpe_Chr12 FPKM 2.57269 2.288347 17.337225 19.145037 17.370457 18.082304 15.62846 10.182394 10.292199 7.287723