Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00353 ATGGCGGCCGCTTATCTGGGGAACCCTGTGCTCACAAGAGTCGCGTTACTTGGTTGTACAAGCAAACCGCAACTGACTTCACTCACAGCTCGGAAGATGACGCCGTGTTTGTGCGCCATGGACTCCAAATCAGTAGGTGTTGGAGGTGATGTATTTTCTGTGACGTCGTCGGCCAAGTCTGGAGTTGATTATCTCGGACAGAGCACTAAAGGAGATATGAATCTCAAACTCGAGCATCTTGAGGCTTTTGGCGCAGATGGTGAAGAAACGTTGGAAGGTCCAATTGAGGAAGTTGCGAGATTAGAGGCACAGGAAGCCGAGGATCTCCTTAGTGATTTGGGAATCCCGAGTCCTTCATCAAGAAATTCACCACAGGGTATATTTTGTAGCCGAACATTGAATCTTCGATCGATCAGTGTCATTGGATATGACATGGACTACACATTGATGCATTATAATGTTATGGCTTGGGAGGGAAGAGCGTACGACTACTGTATGGAAAACTTAAGGAACATGGGTTTCCCTGTTGATGGACTTGCTTTTGACCCAGACTTGGTTATTAGAGGCCTTGTCATAGACAAAGAGAGAGGTAACTTGGTAAAGGCTGATCGTTTTGGTTATATAAAAAGAGCAATGCATGGAACAAACATGCTGTCTACTCGAGATGTAAGTGAGATTTATGGGAGGGAATTGGTGGATCTGCGTAAGGAGAATCGATGGGAGTTCCTCAATACACTATTTTCTGTATCAGAGGCTGTTGCTTATATGCAGATGGTAGACAGATTGGATGATGGAGCCATAGAAGCAGCAGTTGGTCCACTTGATTATAAAGGACTTTACAAGGCTGTTGGGAAAGCACTATTCAGGGCACACGTCGAGGGTCAGCTTAAGAGTGAGATAATGTCTAATCCTGAATTATTTGTCGAGCCTGACCCTGTACTACCATTGACTCTACTGGATCAAAAAGAGGCTGGAAAAAAGCTTTTGCTTATTACCAACTCAGATTATCATTACACGGATAAAATGATGCAGCATTCTTTTAATAGATTTCTTCCAAATGATATGGGATGGCGAGATCTATTTGATATTGTAATAGTCTCGGCAAGAAAGCCAGAATTTTTCCAAACGTCTCATCCATTGTACGAGGTGGTGACTGGTGAGGGTCTCATGCGCCCATGCTTCAAGGCTGTTGCAGGGGGCTTGTACTCTGGTGGTAGCGCACAAATGATTGAGAACTCTTTAAACATTCATGGCGATGAGATATTGTATGTAGGTGATCACATTTATACCGATGTAAGCCAATCTAAAGTACACCTGCGCTGGAGAACAGCATTAATTCTACGAGAATTGGAAGAAGAGTATAGTGCTTTGATTCGTAGTCGTGGTCATCGAGCATCTCTCATTGAGCTTATAAATCAAAAGGAAGTTGTGGGGGATCTGTTCAATCAACTTCGGCTTGCTTTGCAAAGGCGTAGTCAAGGTCGTCCTGCTCAAACCCTTGCAGCGACTAACATGGATGATGAGGAGCTCACTGAGAGCATGCAAAAGCTGCTCATTGTCATGCAAAGATTAGACCAGAAAATTGCTCCAATGCTAGAAGCAGATGGAGATCTATTCAACAAAAGGTGGGGTTTTCTCTCCCGTGCAGGCCTATGGGATAAAAGCCATTTGATGCGACAGATTGAGAAGTATGCGGATATATACACTTCGAGGGTTTCGAACTTCTTACACTACACACCATTCACGTATTTCCGCTCACAAGAACAGACATTGGCTCATGATTCATATTCATTCTACTGTTCGCATGATGAAACTACTGCCGATAGTTAA 1830 43.77 MAAAYLGNPVLTRVALLGCTSKPQLTSLTARKMTPCLCAMDSKSVGVGGDVFSVTSSAKSGVDYLGQSTKGDMNLKLEHLEAFGADGEETLEGPIEEVARLEAQEAEDLLSDLGIPSPSSRNSPQGIFCSRTLNLRSISVIGYDMDYTLMHYNVMAWEGRAYDYCMENLRNMGFPVDGLAFDPDLVIRGLVIDKERGNLVKADRFGYIKRAMHGTNMLSTRDVSEIYGRELVDLRKENRWEFLNTLFSVSEAVAYMQMVDRLDDGAIEAAVGPLDYKGLYKAVGKALFRAHVEGQLKSEIMSNPELFVEPDPVLPLTLLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFDIVIVSARKPEFFQTSHPLYEVVTGEGLMRPCFKAVAGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALILRELEEEYSALIRSRGHRASLIELINQKEVVGDLFNQLRLALQRRSQGRPAQTLAATNMDDEELTESMQKLLIVMQRLDQKIAPMLEADGDLFNKRWGFLSRAGLWDKSHLMRQIEKYADIYTSRVSNFLHYTPFTYFRSQEQTLAHDSYSFYCSHDETTADS 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2401042 2415388 - Cp4.1LG12g03550.1 Cpe12g00353 478350

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00353 609 TIGRFAM HAD-IG-Ncltidse: HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase 127 466 IPR008380 -
Cpe12g00353 609 Pfam 5' nucleotidase family 127 595 IPR008380 -
Cpe12g00353 609 PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING 43 602 IPR008380 -
Cpe12g00353 609 Gene3D - 288 477 IPR023214 -
Cpe12g00353 609 SUPERFAMILY HAD-like 124 596 IPR036412 -
Cpe12g00353 609 PANTHER HAD-SUPERFAMILY HYDROLASE, SUBFAMILY IG, 5'-NUCLEOTIDASE 43 602 - -
Cpe12g00353 609 CDD HAD_cN-II 128 467 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00353 - - - cmos:111460244 1200.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00424 Cpe-Chr7:2726593 Cpe12g00353 Cpe-Chr12:2401042 1.74E-66 dispersed
Cpe12g00353 Cpe-Chr12:2401042 Cpe18g00588 Cpe-Chr18:6294880 3.37E-39 dispersed
Cpe12g00353 Cpe-Chr12:2401042 Cpe11g00199 Cpe-Chr11:1079100 1.01E-67 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g266 Blo01g00017 . . . . . . Bma05g00981 . . . . . . . . . . . . . . . . Cla06g00386 . Cec06g0417 . . . . . Cone15ag0684 . . . . . . . . . . Bpe05g00790 . . . Sed11g1035 . . . . . . Cpe12g00353 . Bhi12g02006 Tan06g2823 Cmetu03g0819 Lac11g1075 Hepe03g0003 . Lcy12g0924 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012890 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00353 Cpe_Chr12 FPKM 14.163815 18.147486 1.950428 1.872365 12.844485 13.597837 12.697629 2.595036 2.340524 2.140198