Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00384 ATGACTTGTGTTCTTAGAAACCATGTTAACCATGGCGGCATTCTCCTCCTCCTCCTCCTCCTCTCTCTGCCACTTCTCTCCGTCGCCGTCTCCGACGCCGAAGCTTCATTCATCGTTCGCCGCCAACTTAAAGCTTTAGAAGATTACGAAAACCTCCCAGATGACTACACATACGAACTCGACATTCCCGACACTTTCCCTAATGAGAGGTTGAAAAAGGCCTACATCGCCCTTCAAGCTTGGAAATTAGCCATTTACTCCGACCCTCTTAACATGACCGCCAATTGGGTTGGTGCCGATGTCTGCTCTTACGTCGGCGTCTTCTGTACCACGGCGCTTGATGACTCAACCATTGAAGTTGTCGCCGGCATTGATTTGAACCATGGCGATATTGCCGGCCATTTGGTGCCGGAATTAGCCCTCATCACCGATTTGGCTCTCTTCCATATTAACTCCAATAGATTCTGTGGGATCGTTCCTCGTAGCTTCTACAAGCTCACTCTCATGTTTGAATTTGATATCAGCACCAACCGCTTCGTCGGCCGTTTCCCTGAGGTTGTTCTTGAATGGTCCGTCGTTAAGTACCTCGATCTCAGGTTCAATAACTTCGAAGGAGAAATCCCACCTGCTCTGTTCACTAAGGAATTCGATGCCATTTTCTTAAACAATAACAGATTCAATTCCTTCATCCCACATACCATCGGAAACTCCACCGTCTCTGTCGTGTCCTTCGCCTACAACGAGTTCCATGGCTGCATTCCTAACACCATCGGCAATATGCCCAACCTCAACCAGGCCCTGTTCCTCGGCAACAACCTCAGCGGGTGTTTCCCTTACGAGATGGGGAAGCTTGTGAATATGACACATATTGATGTTAGTGACAATTTGTTTGTCGGCGAGCTGCCTAAATCGTTGTCGGGGCTGCATAGCTTGGAGGTTTTGGATGTTAGTAAGAATGAATTGAGGGGCTCTGTTTTTGGGGGTGTTTGTGAGTTGCCTAAATTGATTTACTTTAATTGTTCGAGTAATTATTTTAGTGAGGAAGATGCGGCGTGTGTTGGGTCTAAAGAATCTAAGAATTCTTTTGATGATGTTGGGAATTGTTTGGGGAATCGACCGGAGCAGAGAGATGCGGCCAAGTGTAGCTCTGTTTTGGATAAACCCATGGAGTGTGGTGGCTGTGCTGATGATCCATTTGTTCAGTCTCCATCGCCCAGGTTTAGGCCGCCGCCCTCACCATCTGTGGGTGAAATCCCTTACGTAGAAGTTGGGTCTCCACCATCTCCGATTGTGTTTCCACCGCCAACATCTCACACACGAACGCCCTCTGTTCCATCCTCACCGCCACCAGTCCACTCTCCGCCACCGCCCGACCACTCTCCGCCACCGCCCGACCAGTCTCCGCCACCCCCCGTCTACTCTCCGCCTCCCCCCGTCTACTCTCCGCCTCCCCCCGTCTACTCTCCGCCACCCCCCGTCTACTCTCCGCCGCCACCAGAACAATCTCCGCCCCCACCGGTATACTCTCCACCCCCACCAGAACAATCTCCGCCCCCACCGGTATACTCTCCACCCCCACCAGAACAATCTCCGCCCCCACCCGTATACTCTCCGCCCCCACCCGTTTACTCTCCACCCCCACCCGTTTACTCTCCACCCCCACCCGTATACTCTCCACCCCCACCCGTTTACTCTCCACCCCCACCCGTTTACTCTCCACCCCCACCCGTTTACTCTCCACCGCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCACCGCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCACCGCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCACCGCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCACCGCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCACCGCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCACCGCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCACCGCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCACCGCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCACCGCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCACCGCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCACCGCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCACCGCCACCAGAACACTCTCCACCCCCACCCGTTTACTCTCCACCCCCACCAGAACACTCTCCACCCCCACCCGTGTACTCTCCTCCCCCACCAGAACAATCTCCGCCCCCACCCGTTCAATCTCCGCCTCCACCAGAACAATCTCCGCCCCCACCCGTTCAATCCCCGCCTCCACCAGAACAATCTCCGCCCCCACCAGAGCAATCTCCGCCGCCACCAGAACAATCTCCACCTCCTGCGATCGAAACTCCTCCTCCTGCTCCCGATTCTTCTCCACCGCCAGCGTTCGAGGACTTAATTCTCCCACCAAATATCGGCTTCCAGTATTCATCGCCGCCTCCACCACAGTTTCCTGGCTACTAA 2607 54.7 MTCVLRNHVNHGGILLLLLLLSLPLLSVAVSDAEASFIVRRQLKALEDYENLPDDYTYELDIPDTFPNERLKKAYIALQAWKLAIYSDPLNMTANWVGADVCSYVGVFCTTALDDSTIEVVAGIDLNHGDIAGHLVPELALITDLALFHINSNRFCGIVPRSFYKLTLMFEFDISTNRFVGRFPEVVLEWSVVKYLDLRFNNFEGEIPPALFTKEFDAIFLNNNRFNSFIPHTIGNSTVSVVSFAYNEFHGCIPNTIGNMPNLNQALFLGNNLSGCFPYEMGKLVNMTHIDVSDNLFVGELPKSLSGLHSLEVLDVSKNELRGSVFGGVCELPKLIYFNCSSNYFSEEDAACVGSKESKNSFDDVGNCLGNRPEQRDAAKCSSVLDKPMECGGCADDPFVQSPSPRFRPPPSPSVGEIPYVEVGSPPSPIVFPPPTSHTRTPSVPSSPPPVHSPPPPDHSPPPPDQSPPPPVYSPPPPVYSPPPPVYSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVYSPPPPVYSPPPPVYSPPPPVYSPPPPVYSPPPPVYSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVYSPPPPEHSPPPPVYSPPPPEHSPPPPVYSPPPPEQSPPPPVQSPPPPEQSPPPPVQSPPPPEQSPPPPEQSPPPPEQSPPPAIETPPPAPDSSPPPAFEDLILPPNIGFQYSSPPPPQFPGY 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2744480 2747086 + Cp4.1LG12g03790.1 Cpe12g00384 478381

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00384 868 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 576 662 - -
Cpe12g00384 868 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 748 864 - -
Cpe12g00384 868 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 748 864 - -
Cpe12g00384 868 PRINTS Proline rich extensin signature 397 413 - -
Cpe12g00384 868 PRINTS Proline rich extensin signature 433 445 - -
Cpe12g00384 868 PRINTS Proline rich extensin signature 471 487 - -
Cpe12g00384 868 PRINTS Proline rich extensin signature 450 471 - -
Cpe12g00384 868 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 496 590 - -
Cpe12g00384 868 Gene3D Ribonuclease Inhibitor 110 370 IPR032675 -
Cpe12g00384 868 MobiDBLite consensus disorder prediction 574 847 - -
Cpe12g00384 868 MobiDBLite consensus disorder prediction 402 539 - -
Cpe12g00384 868 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 496 590 - -
Cpe12g00384 868 SUPERFAMILY L domain-like 84 350 - -
Cpe12g00384 868 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 12 392 - -
Cpe12g00384 868 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 398 511 - -
Cpe12g00384 868 MobiDBLite consensus disorder prediction 426 539 - -
Cpe12g00384 868 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 552 633 - -
Cpe12g00384 868 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 664 745 - -
Cpe12g00384 868 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 552 633 - -
Cpe12g00384 868 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 664 745 - -
Cpe12g00384 868 MobiDBLite consensus disorder prediction 574 868 - -
Cpe12g00384 868 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 576 662 - -
Cpe12g00384 868 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 12 392 - -
Cpe12g00384 868 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 398 511 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00384 - - - cpep:111806609 819.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00154 Cpe-Chr2:794354 Cpe12g00384 Cpe-Chr12:2744480 4.55E-06 dispersed
Cpe12g00384 Cpe-Chr12:2744480 Cpe03g01458 Cpe-Chr3:11620680 1.05E-89 dispersed
Cpe18g00446 Cpe-Chr18:5474595 Cpe12g00384 Cpe-Chr12:2744480 1.02E-118 dispersed
Cpe12g00384 Cpe-Chr12:2744480 Cpe17g00367 Cpe-Chr17:2640891 1.36E-170 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe02g00154 . 61 399 Leucine-rich Repeat extension Gene Families AT1G62440 55.8 8.0e-48 189.5
Cpe11g01106 CCT,CST 100 268 Leucine-rich Repeat extension Gene Families AT1G62440 71.6 2.0e-43 174.9
Cpe04g01144 . 53 225 Leucine-rich Repeat extension Gene Families AT1G62440 67.6 5.0e-42 170.2
Cpe07g00999 CCT,CST 68 237 Leucine-rich Repeat extension Gene Families AT1G62440 70.6 5.0e-42 170.2
Cpe18g00446 CCT 61 230 Leucine-rich Repeat extension Gene Families AT1G62440 68.2 4.7e-40 163.7
Cpe12g00384 . 42 225 Leucine-rich Repeat extension Gene Families AT1G62440 63.6 1.7e-37 155.2
Cpe04g00813 . 53 382 Leucine-rich Repeat extension Gene Families AT1G62440 55.8 5.4e-36 150.2
Cpe04g01144 . 26 397 Leucine-rich Repeat extension Gene Families AT4G13340 75.1 5.7e-67 253.1
Cpe11g01106 CCT,CST 43 451 Leucine-rich Repeat extension Gene Families AT4G13340 72.0 2.2e-66 251.1
Cpe18g00446 CCT 34 411 Leucine-rich Repeat extension Gene Families AT4G13340 73.1 1.2e-61 235.3
Cpe07g00999 CCT,CST 13 396 Leucine-rich Repeat extension Gene Families AT4G13340 71.6 1.7e-55 214.9
Cpe02g00154 . 17 221 Leucine-rich Repeat extension Gene Families AT4G13340 62.0 1.3e-42 172.2
Cpe03g01458 CST 43 368 Leucine-rich Repeat extension Gene Families AT4G13340 66.7 2.5e-38 157.9
Cpe17g00367 . 37 231 Leucine-rich Repeat extension Gene Families AT4G13340 67.2 4.7e-37 153.7
Cpe08g00278 CST 36 369 Leucine-rich Repeat extension Gene Families AT4G13340 62.1 8.0e-37 152.9
Cpe04g01144 . 28 400 Leucine-rich Repeat extension Gene Families AT3G24480 74.1 2.2e-72 270.4
Cpe11g01106 CCT,CST 75 446 Leucine-rich Repeat extension Gene Families AT3G24480 74.1 2.3e-69 260.4
Cpe18g00446 CCT 24 412 Leucine-rich Repeat extension Gene Families AT3G24480 70.0 2.6e-68 256.9
Cpe07g00999 CCT,CST 43 396 Leucine-rich Repeat extension Gene Families AT3G24480 74.0 4.3e-63 239.6
Cpe02g00154 . 25 221 Leucine-rich Repeat extension Gene Families AT3G24480 64.6 4.0e-45 179.9
Cpe12g00384 . 30 225 Leucine-rich Repeat extension Gene Families AT3G24480 63.5 3.5e-41 166.8
Cpe03g01458 CST 43 368 Leucine-rich Repeat extension Gene Families AT3G24480 63.6 5.6e-39 159.5
Cpe17g00367 . 28 231 Leucine-rich Repeat extension Gene Families AT3G24480 61.3 3.6e-38 156.8
Cpe08g00278 CST 36 369 Leucine-rich Repeat extension Gene Families AT3G24480 58.8 2.0e-36 151.0
Cpe04g00813 . 53 383 Leucine-rich Repeat extension Gene Families AT3G24480 56.6 2.6e-36 150.6
Cpe03g01458 CST 15 369 Leucine-rich Repeat extension Gene Families AT3G22800 64.3 8.5e-53 205.3
Cpe08g00278 CST 38 368 Leucine-rich Repeat extension Gene Families AT3G22800 66.0 2.7e-51 200.3
Cpe04g00813 . 50 382 Leucine-rich Repeat extension Gene Families AT3G22800 60.2 7.4e-41 165.6
Cpe04g01144 . 65 393 Leucine-rich Repeat extension Gene Families AT3G22800 62.2 5.3e-39 159.5
Cpe11g01106 CCT,CST 86 445 Leucine-rich Repeat extension Gene Families AT5G25550 63.0 7.6e-40 162.2
Cpe07g00999 CCT,CST 54 234 Leucine-rich Repeat extension Gene Families AT5G25550 73.5 2.2e-39 160.6
Cpe02g00154 . 61 401 Leucine-rich Repeat extension Gene Families AT5G25550 55.1 2.9e-39 160.2
Cpe04g01144 . 39 219 Leucine-rich Repeat extension Gene Families AT5G25550 71.8 3.8e-39 159.8
Cpe18g00446 CCT 47 413 Leucine-rich Repeat extension Gene Families AT5G25550 61.0 8.4e-39 158.7
Cpe08g00278 CST 36 368 Leucine-rich Repeat extension Gene Families AT5G25550 66.4 1.1e-38 158.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000785 1 2 1 1 0 5 5 5 5 1 2 5 5 4 2 4 4 4 3 4 4 3 2 4 3 3 5 2 2 1 92
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00384 Cpe_Chr12 FPKM 0.950305 1.029993 1.10272 0.731924 3.041657 2.582754 2.661906 0.997328 0.845538 1.394829