Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00384 ATGACTTGTGTTCTTAGAAACCATGTTAACCATGGCGGCATTCTCCTCCTCCTCCTCCTCCTCTCTCTGCCACTTCTCTCCGTCGCCGTCTCCGACGCCGAAGCTTCATTCATCGTTCGCCGCCAACTTAAAGCTTTAGAAGATTACGAAAACCTCCCAGATGACTACACATACGAACTCGACATTCCCGACACTTTCCCTAATGAGAGGTTGAAAAAGGCCTACATCGCCCTTCAAGCTTGGAAATTAGCCATTTACTCCGACCCTCTTAACATGACCGCCAATTGGGTTGGTGCCGATGTCTGCTCTTACGTCGGCGTCTTCTGTACCACGGCGCTTGATGACTCAACCATTGAAGTTGTCGCCGGCATTGATTTGAACCATGGCGATATTGCCGGCCATTTGGTGCCGGAATTAGCCCTCATCACCGATTTGGCTCTCTTCCATATTAACTCCAATAGATTCTGTGGGATCGTTCCTCGTAGCTTCTACAAGCTCACTCTCATGTTTGAATTTGATATCAGCACCAACCGCTTCGTCGGCCGTTTCCCTGAGGTTGTTCTTGAATGGTCCGTCGTTAAGTACCTCGATCTCAGGTTCAATAACTTCGAAGGAGAAATCCCACCTGCTCTGTTCACTAAGGAATTCGATGCCATTTTCTTAAACAATAACAGATTCAATTCCTTCATCCCACATACCATCGGAAACTCCACCGTCTCTGTCGTGTCCTTCGCCTACAACGAGTTCCATGGCTGCATTCCTAACACCATCGGCAATATGCCCAACCTCAACCAGGCCCTGTTCCTCGGCAACAACCTCAGCGGGTGTTTCCCTTACGAGATGGGGAAGCTTGTGAATATGACACATATTGATGTTAGTGACAATTTGTTTGTCGGCGAGCTGCCTAAATCGTTGTCGGGGCTGCATAGCTTGGAGGTTTTGGATGTTAGTAAGAATGAATTGAGGGGCTCTGTTTTTGGGGGTGTTTGTGAGTTGCCTAAATTGATTTACTTTAATTGTTCGAGTAATTATTTTAGTGAGGAAGATGCGGCGTGTGTTGGGTCTAAAGAATCTAAGAATTCTTTTGATGATGTTGGGAATTGTTTGGGGAATCGACCGGAGCAGAGAGATGCGGCCAAGTGTAGCTCTGTTTTGGATAAACCCATGGAGTGTGGTGGCTGTGCTGATGATCCATTTGTTCAGTCTCCATCGCCCAGGTTTAGGCCGCCGCCCTCACCATCTGTGGGTGAAATCCCTTACGTAGAAGTTGGGTCTCCACCATCTCCGATTGTGTTTCCACCGCCAACATCTCACACACGAACGCCCTCTGTTCCATCCTCACCGCCACCAGTCCACTCTCCGCCACCGCCCGACCACTCTCCGCCACCGCCCGACCAGTCTCCGCCACCCCCCGTCTACTCTCCGCCTCCCCCCGTCTACTCTCCGCCTCCCCCCGTCTACTCTCCGCCACCCCCCGTCTACTCTCCGCCGCCACCAGAACAATCTCCGCCCCCACCGGTATACTCTCCACCCCCACCAGAACAATCTCCGCCCCCACCGGTATACTCTCCACCCCCACCAGAACAATCTCCGCCCCCACCCGTATACTCTCCGCCCCCACCCGTTTACTCTCCACCCCCACCCGTTTACTCTCCACCCCCACCCGTATACTCTCCACCCCCACCCGTTTACTCTCCACCCCCACCCGTTTACTCTCCACCCCCACCCGTTTACTCTCCACCGCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCACCGCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCACCGCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCACCGCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCACCGCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCACCGCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCACCGCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCACCGCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCACCGCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCACCGCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCACCGCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCACCGCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCACCGCCACCAGAACACTCTCCACCCCCACCCGTTTACTCTCCACCCCCACCAGAACACTCTCCACCCCCACCCGTGTACTCTCCTCCCCCACCAGAACAATCTCCGCCCCCACCCGTTCAATCTCCGCCTCCACCAGAACAATCTCCGCCCCCACCCGTTCAATCCCCGCCTCCACCAGAACAATCTCCGCCCCCACCAGAGCAATCTCCGCCGCCACCAGAACAATCTCCACCTCCTGCGATCGAAACTCCTCCTCCTGCTCCCGATTCTTCTCCACCGCCAGCGTTCGAGGACTTAATTCTCCCACCAAATATCGGCTTCCAGTATTCATCGCCGCCTCCACCACAGTTTCCTGGCTACTAA 2607 54.7 MTCVLRNHVNHGGILLLLLLLSLPLLSVAVSDAEASFIVRRQLKALEDYENLPDDYTYELDIPDTFPNERLKKAYIALQAWKLAIYSDPLNMTANWVGADVCSYVGVFCTTALDDSTIEVVAGIDLNHGDIAGHLVPELALITDLALFHINSNRFCGIVPRSFYKLTLMFEFDISTNRFVGRFPEVVLEWSVVKYLDLRFNNFEGEIPPALFTKEFDAIFLNNNRFNSFIPHTIGNSTVSVVSFAYNEFHGCIPNTIGNMPNLNQALFLGNNLSGCFPYEMGKLVNMTHIDVSDNLFVGELPKSLSGLHSLEVLDVSKNELRGSVFGGVCELPKLIYFNCSSNYFSEEDAACVGSKESKNSFDDVGNCLGNRPEQRDAAKCSSVLDKPMECGGCADDPFVQSPSPRFRPPPSPSVGEIPYVEVGSPPSPIVFPPPTSHTRTPSVPSSPPPVHSPPPPDHSPPPPDQSPPPPVYSPPPPVYSPPPPVYSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVYSPPPPVYSPPPPVYSPPPPVYSPPPPVYSPPPPVYSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVYSPPPPEHSPPPPVYSPPPPEHSPPPPVYSPPPPEQSPPPPVQSPPPPEQSPPPPVQSPPPPEQSPPPPEQSPPPPEQSPPPAIETPPPAPDSSPPPAFEDLILPPNIGFQYSSPPPPQFPGY 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2744480 2747086 + Cp4.1LG12g03790.1 Cpe12g00384 478381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00384 868 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 576 662 - -
Cpe12g00384 868 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 748 864 - -
Cpe12g00384 868 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 748 864 - -
Cpe12g00384 868 PRINTS Proline rich extensin signature 397 413 - -
Cpe12g00384 868 PRINTS Proline rich extensin signature 433 445 - -
Cpe12g00384 868 PRINTS Proline rich extensin signature 471 487 - -
Cpe12g00384 868 PRINTS Proline rich extensin signature 450 471 - -
Cpe12g00384 868 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 496 590 - -
Cpe12g00384 868 Gene3D Ribonuclease Inhibitor 110 370 IPR032675 -
Cpe12g00384 868 MobiDBLite consensus disorder prediction 574 847 - -
Cpe12g00384 868 MobiDBLite consensus disorder prediction 402 539 - -
Cpe12g00384 868 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 496 590 - -
Cpe12g00384 868 SUPERFAMILY L domain-like 84 350 - -
Cpe12g00384 868 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 12 392 - -
Cpe12g00384 868 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 398 511 - -
Cpe12g00384 868 MobiDBLite consensus disorder prediction 426 539 - -
Cpe12g00384 868 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 552 633 - -
Cpe12g00384 868 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 664 745 - -
Cpe12g00384 868 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 552 633 - -
Cpe12g00384 868 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 664 745 - -
Cpe12g00384 868 MobiDBLite consensus disorder prediction 574 868 - -
Cpe12g00384 868 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 576 662 - -
Cpe12g00384 868 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 12 392 - -
Cpe12g00384 868 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 398 511 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00154 Cpe-Chr2:794354 Cpe12g00384 Cpe-Chr12:2744480 4.55E-06 dispersed
Cpe12g00384 Cpe-Chr12:2744480 Cpe03g01458 Cpe-Chr3:11620680 1.05E-89 dispersed
Cpe18g00446 Cpe-Chr18:5474595 Cpe12g00384 Cpe-Chr12:2744480 1.02E-118 dispersed
Cpe12g00384 Cpe-Chr12:2744480 Cpe17g00367 Cpe-Chr17:2640891 1.36E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00384 - - cpep:111806609 819.69