Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00387 ATGGAGGTGCGAATCAGAGAGCGGATACAGACGCAGGCCTGCGAGTCTCCTCGAAGTCGTCTGGATGAAGTGTCAATGGAGCCCGGTCCTTTTAATCACCACATCAGGGGAGTGCCTACCCATGGGGGTCGATACATTCAGTACAATATCTATGGCAATCTATTTGAAGTTCCTAGGAAGTATATTCCTCCGATAAGGCCTGTTGGAAGAGGAGCTTATGGAATTGTCTGTGCTGCTTTGAATTCAGAAACAAATGAAGAGGTTGCAATTAAGAAGGTTGGCAATGCATTTGACAATAGAATTGACGCTAAAAGAACCTTGCGAGAAATCAAGCTTCTTCTACACATGGAACATGATAATATTATTGGTCTTGAAGATATTATAAGACCTCCTCAGAAGGAGACTTTCAATGATGTATGCCTTGTTTATGAATTGATGGATACTGATCTGAATCAGATAATACGGTCCAATGAATCGTTGACTGATGAACATTGTCGGTACTTTGTGTACCAGTTGTTACGAGGGCTAAAATACATACATTCTGCTAACGTTCTACACCGTGATTTGAAACCGAGCAATTTGTTCGTGAATGCAAATTGTGACCTGAAAATTGGAGACTTTGGGCTTGCAAGGACAACTTCTGAAACTGATTTTATGACTGAGTATGTTGTTACTCGGTGGTATCGTGCACCTGAATTGCTTCTTAATTGTTCAGAATACAGTGGAGCAATTGATATCTGGTCTGTTGGCTGTATATTTGGTGAAATTATGCACAGACAACCACTGTTTCCTGGAAGAGACTATCTCATTGGATCACCCGATGACTCGAGCCTCGGATTCTTACGAAGCGACAATCCACAAAAATATTTTAGACTTCTTCCTCACTTCCCCAGGCAACAGTTTTCCACTCGATTTCCCACCATGTCTCCTGCTGCAATCGACTTGCTGGAGAAGATGCTCGTCTTCGATCCTACAAAGCGCATTACAGTTGATGAGGCACTGTGCCATCCTTACTTAGCACCTCTTCATGATACCAATGTGGAGCCAGTATGTCCAAGGCCCTTCAGTTTTGATTTCGAGCAGCCATCGTATACTGAAGAACACATTAAGGAACTTGTATGGAGAGAATCCATGAAGTTCAACCCGGATCCCGCTAACTGA 1161 42.89 MEVRIRERIQTQACESPRSRLDEVSMEPGPFNHHIRGVPTHGGRYIQYNIYGNLFEVPRKYIPPIRPVGRGAYGIVCAALNSETNEEVAIKKVGNAFDNRIDAKRTLREIKLLLHMEHDNIIGLEDIIRPPQKETFNDVCLVYELMDTDLNQIIRSNESLTDEHCRYFVYQLLRGLKYIHSANVLHRDLKPSNLFVNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYSGAIDIWSVGCIFGEIMHRQPLFPGRDYLIGSPDDSSLGFLRSDNPQKYFRLLPHFPRQQFSTRFPTMSPAAIDLLEKMLVFDPTKRITVDEALCHPYLAPLHDTNVEPVCPRPFSFDFEQPSYTEEHIKELVWRESMKFNPDPAN 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2759463 2764530 - Cp4.1LG12g03850.1 Cpe12g00387 478384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00387 386 ProSitePatterns MAP kinase signature. 97 200 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cpe12g00387 386 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 37 385 - -
Cpe12g00387 386 Gene3D Transferase(Phosphotransferase) domain 1 146 366 - -
Cpe12g00387 386 SMART serkin_6 62 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe12g00387 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Cpe12g00387 386 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11-RELATED 37 385 - -
Cpe12g00387 386 ProSiteProfiles Protein kinase domain profile. 62 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe12g00387 386 ProSitePatterns Protein kinases ATP-binding region signature. 68 92 IPR017441 GO:0005524
Cpe12g00387 386 SUPERFAMILY Protein kinase-like (PK-like) 65 346 IPR011009 -
Cpe12g00387 386 Gene3D Phosphorylase Kinase; domain 1 45 376 - -
Cpe12g00387 386 Pfam Protein kinase domain 66 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00357 Cpe-Chr5:1990847 Cpe12g00387 Cpe-Chr12:2759463 0 dispersed
Cpe12g00387 Cpe-Chr12:2759463 Cpe20g00780 Cpe-Chr20:6989381 0 dispersed
Cpe12g00387 Cpe-Chr12:2759463 Cpe13g00136 Cpe-Chr13:984706 0 wgd
Cpe12g00387 Cpe-Chr12:2759463 Cpe17g00371 Cpe-Chr17:2686582 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62751 PF00069 Pkinase 4.60E-68 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00387 K20600 - csv:101215189 664.84