Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00470 ATGGAATTTCTTACCAAATCAAACGCCTACTCGGAGGAGGAAGAAGAGGAAGAAGAAGAGGAGGAAGATGATGAAATCCGGGGTGTTGCATGCGATTTCTTCCCAAATTCACGCACCCAAAATCAGGAATGGGTTCAACACCCTCCAATAAATCAGGCCTTGGATCACCACCCTCTTATGGACTTATCCCTCCGGATGGAGACTAATGGGTTTGGTGTTGTGGAGAGAGAGCACATGTTCGACAAGGTTGTCACTCCAAGCGATGTCGGCAAATTAAACCGTTTGGTTATCCCCAAACAACACGCCGAGAAATACTTCCCTTTGGACTCTGCCACCAACGACAAGGGCCTCATCTTGAACTTTGAGGACCCTAATGGAAAGCCCTGGCGCTTTCGTTACTCTTACTGGAATAGCAGCCAAAGCTACGTGATGACTAAAGGTTGGAGCCGTTTTGTTAAGGACAAAAAGCTCGATGCAGGCGACGTCGTTTCCTTTCACCGTGGCGTTGGCGATTCCGCTAGGGATCGCCTTTTCATCGACTGGCGCCGCCGTCCTAACACCCTGACTCCTCCTCCTCCTCCTCACCACCACCACTTCTCCAACCCTCCTCTCCTCTTCCTCCCACAATCCCTCCGCTGGGCCACCGCCCGCCACTTGCCTCCACCGGCGCAGCCACCGCCTCACCACCGCCTCTATTCCAATTACGCCTTCGAAATCCCTAATTTAGGTATGCCTCATAACAACAATTCTTCCATGTATTATTTTAGACCCACCTCCATGTCCTCTTCTCCTTCGGAGATTGTTGTTCATAGTGAAGGGTCTTCCATGGGGATTAAGAAACCCACCTCCGGTGCCGCGAAACGGCTGAGACTCTTCGGAGTAAACATGGAGTGTGCTGCAGAGGATGGAGGCGGAGGAGGAGAAGATCTGTCAAACGGCGGCGTTTCAAGGAGAGGGAAACAGCCCTTCTCGTTGAAGAATTGGGATTTGGTTTAA 996 51.31 MEFLTKSNAYSEEEEEEEEEEEDDEIRGVACDFFPNSRTQNQEWVQHPPINQALDHHPLMDLSLRMETNGFGVVEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSATNDKGLILNFEDPNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRGVGDSARDRLFIDWRRRPNTLTPPPPPHHHHFSNPPLLFLPQSLRWATARHLPPPAQPPPHHRLYSNYAFEIPNLGMPHNNNSSMYYFRPTSMSSSPSEIVVHSEGSSMGIKKPTSGAAKRLRLFGVNMECAAEDGGGGGEDLSNGGVSRRGKQPFSLKNWDLV 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4456795 4457790 + Cp4.1LG12g04720.1 Cpe12g00470 478467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00470 331 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 22 301 - -
Cpe12g00470 331 ProSiteProfiles B3 DNA-binding domain profile. 80 185 IPR003340 GO:0003677
Cpe12g00470 331 Coils Coil 1 21 - -
Cpe12g00470 331 MobiDBLite consensus disorder prediction 1 26 - -
Cpe12g00470 331 Pfam B3 DNA binding domain 80 184 IPR003340 GO:0003677
Cpe12g00470 331 Gene3D - 73 199 IPR015300 -
Cpe12g00470 331 MobiDBLite consensus disorder prediction 11 26 - -
Cpe12g00470 331 CDD B3_DNA 78 167 IPR003340 GO:0003677
Cpe12g00470 331 SUPERFAMILY DNA-binding pseudobarrel domain 77 180 IPR015300 -
Cpe12g00470 331 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 22 301 IPR044800 GO:0003700
Cpe12g00470 331 SMART B3_2 80 185 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00757 Cpe-Chr5:4687070 Cpe12g00470 Cpe-Chr12:4456795 6.66E-68 dispersed
Cpe08g00992 Cpe-Chr8:7710465 Cpe12g00470 Cpe-Chr12:4456795 4.56E-50 dispersed
Cpe12g00470 Cpe-Chr12:4456795 Cpe17g00919 Cpe-Chr17:7125622 1.65E-129 dispersed
Cpe12g00470 Cpe-Chr12:4456795 Cpe14g00507 Cpe-Chr14:3214566 3.73E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50316 PF02362 B3 3.70E-29 CL0405 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00470 - - cmos:111436350 611.298