Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00474 ATGGAGCTGGATGGCATCGAGGGCGTGCCATCCATGGATGTGATGGACGAGGAGGATAAGACCCTTCAACGTCACTGTCAGTTTCCTTCCATTTCCAAGCCTCGGATCAACAATAACGACAATCCCACCACCACAAGTGTTCACGAGCTTCTCGAATGTCCCGTTTGCACCAATTCTATGTATCCCCCAATTCATCAGTGCCCCAATGGTCATACCCTCTGTTCTTCATGTAAAACAAGGGTAGACAACCGTTGTCCGACGTGCAGACAAGAGCTCGGCGATATCAGGTGTCTAGCGTTAGAGAAAATAGCCGAATCGCTTAAACTGGCTTGTAAATTCTGCACGTTCGGGTGCCCGGAGATATTGCCTTACTACAGCAAACTCAAACATGAGTCTGCCTGTTACTTTAGACCATATACCTGTCCTTATGCTGGATCAGACTGTCCAGTTGATGGGGATATTCCTTTCCTTGTTTCTCATCTTCGTGACGATCACAAAGTCGACATGCATTCTGGATGCACGTTTAATCATCGTTATGTAAAGGCTAATCCATGCGAAGTCGAAAATGCTACATGGATGCTAACTGTGTTTCACTGTTTTGGGCAGTATTTCTGTCTTCATTTTGAAGCCTTTCAGCTGGGTATGGCACCGGTTTACATGGCGTTTCTCCGATTCATGGGGGACGAAACGGATGCTCGAAACTACAGTTACAGCCTTGAGGTGGGTGGAAATGGGAGGAAGCTGATATGGGAGGGCAACCCTCGAAGCATTCGGGACAACCACAAGAAAGTTCGAGACAGCCACGATGGCCTCATTATACAACGAAACATGGCGCTCTTCTTTTCGGGCGGAGAAAGGAAAGAGCTGAAGCTTCGGATCACAGGACGGATTTGGAAAGAACAAAATAAACAGTAA 915 47.21 MELDGIEGVPSMDVMDEEDKTLQRHCQFPSISKPRINNNDNPTTTSVHELLECPVCTNSMYPPIHQCPNGHTLCSSCKTRVDNRCPTCRQELGDIRCLALEKIAESLKLACKFCTFGCPEILPYYSKLKHESACYFRPYTCPYAGSDCPVDGDIPFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETDARNYSYSLEVGGNGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRIWKEQNKQ 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4513988 4517422 + Cp4.1LG12g04730.1 Cpe12g00474 478471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00474 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 96 IPR013083 -
Cpe12g00474 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 302 - -
Cpe12g00474 304 CDD Sina 167 295 - -
Cpe12g00474 304 CDD RING-HC_SIAHs 51 89 - -
Cpe12g00474 304 Pfam Seven in absentia protein family 95 294 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cpe12g00474 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 160 IPR013083 -
Cpe12g00474 304 ProSiteProfiles Zinc finger RING-type profile. 53 89 IPR001841 -
Cpe12g00474 304 SUPERFAMILY TRAF domain-like 106 298 - -
Cpe12g00474 304 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT3 1 302 - -
Cpe12g00474 304 ProSiteProfiles Zinc finger SIAH-type profile. 106 166 IPR013010 GO:0008270
Cpe12g00474 304 SUPERFAMILY RING/U-box 47 93 - -
Cpe12g00474 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 161 294 IPR008974 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00015 Cpe-Chr9:86520 Cpe12g00474 Cpe-Chr12:4513988 9.23E-168 dispersed
Cpe12g00474 Cpe-Chr12:4513988 Cpe14g00039 Cpe-Chr14:210301 6.14E-180 dispersed
Cpe01g01997 Cpe-Chr1:17053508 Cpe12g00474 Cpe-Chr12:4513988 4.92E-24 transposed
Cpe12g00474 Cpe-Chr12:4513988 Cpe17g01016 Cpe-Chr17:7696655 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00474 K04506 - csv:101209363 644.039