Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00478 ATGTTCGCACATTTCATTCTTCCGCACAGAGCTTACTTTTCTGTTAAATCTGAATTTTGGGGTAAGAATTTGGATTTTCGGAACAGAAATGATAGTTTTAGTGATAATTCAAGAAAATCTCATGTGTATTTTCAACCGATTAGAGCTGGTGTGAAATGGAGGAAGGAGCTTCCGTTTGATAATGTAATACAGAGGGATAAGAAGCTGAAATTGGTTACTCGGATTAGGAAGATTCTAGTTCAGCATCATGATAATGTTATGTCACTTAGGGGTTTGGGTAAATTCAGGAGAGATTTAGGTGTACAGGAAAAGACGAGGCTAATTGAGTTGTTGAAGATGTTCCCTGCAGTATTTGAGATTGTAGAAGAAGAAGCGTTTTCTTTGAAATTTAAATTGACGGAAGAGGCTGAAAGGTTGTACTTCGAGGAGCTGAAGATCAGAAATGAAATGGAAGGTTTGTTGGTTACTAAGCTGAGGAAGTTACTGATGATGTCTGCTGATAAGCGAATATTGTTGGAGAAAATTGCACATTTGAGGACTGATTTTGGTCTTCCTTCCGAGTTTCGTGACACGATTTGCCATCGTTATCCTCAGTACTTTAGAGTTGTGGCAACCGAGAGCGGTCCAGCTCTCGAATTGACACACTGGGATCCTGAACTTGCTGTTTCTGCAGCAGAGTTAGCCGAGGAGGAGAACCGAGCTAGAGAATTGGAAGAGAAGAATTTGATTATTGACCGACCGCTGAAGTTTAATCGAGTGAAGCTACCTAAGGGGCTTAAGCTTTCGAAGAATGAGATGAGGAAAATGAATGAGTTTAGGGACATTCCTTATATCTCTCCGTATTCTGATTTCTCAGGGATTAAGGCAGGTACACCCCAGAAAGAGAAACATGCTTGTGGGGTTGTTCATGAGATTTTAAGCCTTACACTCGAGAAGAGAACTCTTGTTGATCATTTCACTCATTTCCGGGAGGAGTTTAGATTCTCCCAGCAGTTGAGGGGGATGCTAATAAGGCATCCCAATATGTTTTATGTCTCGTTGAAAGGGGATAAAAACTCGGTTTTCCTCAGAGAAGCATATCGCGATTCTCAGTTGATCGACAAAGATCGGTTGTTAATCATAAAGGAGAAGTTTCGAGGTCTTGTGGCTGTTCCTCAATTCAAAGGCAGAGGAGCTCCCGAAAGTGACACGGATTGGCGAGAAACCAATCATGGAGATGATATGAGAGGTGAAGAATGGTCTGATGTCGACGATGACGATGATGAATTCGACAACGATGGTGAGGATGACTGGATTGATGAACAGATCAATAACTTAGAAATGGCTGATCAGAGGCTTCTTTCTCCTCCTGCATTACCCGATGGACGGCCCCAAGAAAGATGGTGA 1386 41.92 MFAHFILPHRAYFSVKSEFWGKNLDFRNRNDSFSDNSRKSHVYFQPIRAGVKWRKELPFDNVIQRDKKLKLVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIELLKMFPAVFEIVEEEAFSLKFKLTEEAERLYFEELKIRNEMEGLLVTKLRKLLMMSADKRILLEKIAHLRTDFGLPSEFRDTICHRYPQYFRVVATESGPALELTHWDPELAVSAAELAEEENRARELEEKNLIIDRPLKFNRVKLPKGLKLSKNEMRKMNEFRDIPYISPYSDFSGIKAGTPQKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPNMFYVSLKGDKNSVFLREAYRDSQLIDKDRLLIIKEKFRGLVAVPQFKGRGAPESDTDWRETNHGDDMRGEEWSDVDDDDDEFDNDGEDDWIDEQINNLEMADQRLLSPPALPDGRPQERW 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4613225 4614610 + Cp4.1LG12g04780.1 Cpe12g00478 478475

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00478 461 MobiDBLite consensus disorder prediction 393 411 - -
Cpe12g00478 461 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 18 435 IPR040293 GO:0000373|GO:0003723
Cpe12g00478 461 MobiDBLite consensus disorder prediction 389 461 - -
Cpe12g00478 461 Coils Coil 220 240 - -
Cpe12g00478 461 Pfam Plant organelle RNA recognition domain 55 383 IPR021099 GO:0003723
Cpe12g00478 461 MobiDBLite consensus disorder prediction 412 436 - -
Cpe12g00478 461 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 18 435 IPR045040 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00478 - - - cmax:111488626 867.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00478 Cpe-Chr12:4613225 Cpe12g00498 Cpe-Chr12:4885191 2.60E-44 dispersed
Cpe03g01249 Cpe-Chr3:10127541 Cpe12g00478 Cpe-Chr12:4613225 5.69E-63 transposed
Cpe06g00269 Cpe-Chr6:1463732 Cpe12g00478 Cpe-Chr12:4613225 2.00E-49 transposed
Cpe06g00425 Cpe-Chr6:2430708 Cpe12g00478 Cpe-Chr12:4613225 6.55E-55 transposed
Cpe12g01012 Cpe-Chr12:8469360 Cpe12g00478 Cpe-Chr12:4613225 2.53E-32 transposed
Cpe13g00040 Cpe-Chr13:320791 Cpe12g00478 Cpe-Chr12:4613225 9.06E-39 transposed
Cpe13g00681 Cpe-Chr13:6374794 Cpe12g00478 Cpe-Chr12:4613225 7.18E-45 transposed
Cpe15g00281 Cpe-Chr15:3082472 Cpe12g00478 Cpe-Chr12:4613225 6.05E-46 transposed
Cpe12g00478 Cpe-Chr12:4613225 Cpe17g01025 Cpe-Chr17:7755060 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1082 . . . . . . . . . Cmo17g00545 . . . . . . . Bhi01g02663 . . . Hepe05g1249 . . . . . . . . . . . . . . . . . Blo02g00417 . . Bda13g00292 . . Bma02g00998 . . . . . Cma17g00564 . Car17g00518 Cpe12g00478 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010663 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00478 Cpe_Chr12 FPKM 12.719608 14.898363 10.787112 11.984819 12.341277 12.645935 13.000051 13.199701 11.020749 11.412941