Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe12g00501 | GCTGCCCTCGCTAACATCACTCTATATCGCCCAACGCCTTCCTCCTCCATTGCCCACTTCTCCACTTCTCCGGACGATCTCCAAGGATTGGTTGATCCGGACGAGTCGCTTCCGTCTGAGGGTTCGCGTGCCGAATGCTTTTCGGCCCCAGAACTCTCTTTGCTGCGTGATTCGTTATTGGATTCTCATGCCGACTCGCCTTCTTCAGAGCCGACGCTCAAGTCTGGTAACATTTCAAACGATGCCATTTCGATATTAGATACAATTCGTAATACTGATGATGGGTTCGGGGACAAAACCCAAAGATTACTTAGGCGGTTTAGGCAGAATTTGAATCCGGATTTGGTGGTTGAGATTTTGGGTCTTTTGAGAAATCCTGAATTGTGTGTCAAATTCTTTTTATGGGCTGGTCGACAAATTGGTTACAATCATACTGCGTCAGTGTACAATGCGTTGTTAGATGTTTATGAATGTGGTAGCTATGATCGAGTACCCGAGAAGTTTCTTCGGGAAATTAAGGATGATGACAAAGAGGTGCTTGGGAAGTTGCTTAATGTGTTGATTAGGAAGTGTTGTCGGAATGGGTTTTGGAATGTAGCATTGGAAGAGCTCGGGAGGCTTAAGGACTTTGGATACAAGCCTACCCGGTTAACTTATAATGCTTTAATTCAAGTCTTTCTTAGAGCAGATAAGTTGGACACTGCTTATTTGGTTCATAGAGAAATGTCAGAGTTAGGATTCAATATGGATGAGTTTACTCTTGGTCTTTTTGCCCAAGCTCTCTGCAAAGTGGGAAAATGGAGAGAGGCCCTCTCGTTAATTGAGAAAGAAGATTTTGTCCCTAATACGATTCTTTATACGAAGATGATATCTGGACTGTGCGACGCTTCGTTTTTTGAAGAAGCTATGGATTTTTTGAACAGGATGCGGTCGAGTTCTTGCATCCCTAATGCTCAGACTTATAAGATCTTGCTTTGTGGCTGTTTGAATAAAAAACAGTTGGGTCGATGTAAGAGAATTCTAAGCATGATGATTGCAGAAGGCTGTTTCCCGACTTATACGATATTTAATTCTCTTGTTCATGCTTATTGCAAATCAGGCGATTTTTCGTATGCTTATAAGTTGCTTAAGAAAATGGAAAAATGTGAATGCAAACCTGGCTATGTGGTTTACAATATCTTCATTGGCGGTATTTGTAACGGTAAAGAATTACCTGGGCCAATTACATTTGAGTTGGCTGAGAAAGCGTACAACGAGATGTGTTCTTCCGGAACTGTTCTAAATAAGGTCAATATTGTAAGCTTTGCTCGATGCCTTTGCGGCTTTGGGAAATTCGAGGAAGCATATAAAGTAATCCATGAAATGATGGGTAATGGTTTCATTCCTGATACATCTACATATTCTGAAGTGATAGGTTTTATGTGTAATGCCTCAAGGGTAGAAAATGCCTTTTTGCTATTTAAAGAAATGAAAGGGGCTGGTATGGTTCCTGATGTTTATACATACACAATTTTAATTGATTGTTTTTCGAAAGCTGGCCTCATTCAACAAGCTCACAATTGGCTAGACGAAATGGTAAGAGATGGCTGTGAACCTACCGTGGTGACTTATACAACCCTCATCCATGCATATCTTAAGGCTAAGAAGGTTTCGGTCGCTAATGAACTTTTTGAGGTAATGATAGCCAAGGGTTGTATTCCTAATGTTATTACATATACAGCTTTAATTGATGGGTATAGTAAATCAGGGAATATAGAAAAAGCTTGCCAGATTTATGCAAGAATGAGAGGTGATGCAGACATTCCCGATGTCGATATGTATTTTAAAACAGAAAATAACGTGTCTGAAAAGCCTAATGTTGTTACGTATGGAGCTTTGGTGGATGGTTTATGCAAGGCTCATAAAGTCAAAGATGCGTGTGACTTATTGGAAACGATGTTTTCGGAAGGCTGTGAACCAAACAACATTGTATATGATGCACTTATTGATGGCTTTTGTAAGGCTGCAAAGTTGGATGAAGCCCAAGAGGTGTTTGTTAAGATGGTAGAGCGTGGGTATAACCCTAATGTCTATACTTATAGCTCTCTTATCGATAGATTGTTCAAGGATAAGCGTCTAGATCTCGTATTGAAAGTGTTGTCCAAAATGTTAGAGAATTCTTGTGCTCCTAATGTTGTTATCTACACAGAGATGATTGATGGACTTTGTAAAGTGGCAAAGACAGATGAAGCTTATAAACTTATGTTGATGATGGAAGAGAAGGGATGTAAACCAAATGTTGTGACCTACACTGCAATGATTGATGGCTTTGGGAAAGCTGGTAAAGTTGACAAATGCCTCGAGCTTTTCAGGGAAATGAGCTCGAAAGGCTGTTCTCCGAATTTTGTCACCTACACCGTGTTGATCAACCATTGCTGTGCTTCTGGCCGTTTAGATGAGGCCTATGCACTTTTGGATGAAATGAAACAAACATACTGGCCGAAACATGTATCGAGCTACTGTAAGGTTGTTGAAGGCTATAACCGGGAGTTCATTCTCTCTCTCGGGCTCTTAGAGGAAGTGGAAAAGAATGATGCTACCCCAATTATTCTGCTGTACAGGGTTTTGATTGATAACTTTGTTAAGGCAGGAAGACTGGAAGTAGCACTGGAGCTCCACAAAGAGGTTATATCAGCTTCAATGTCTATGGCTGCTAAGAAAAATATGTACACAACTTTGATTTACAGCTTTTCTAAGGCAATGAAGATTGATCAGGCGTTCGAGTTATATAATGATATGATAAGACAGGGTGTTATTCCAGATCTTGGTACATTTGTCGACCTTATTATGGGGCTCGTCAAGGTTAGCAGGTGGGAAGAAGCACTCCAGTTGTCAGATAGCATATGTCAAATGCTGTATCTTTCTTTTTTCTTTTTTTTCTTTGGTTCTCTGCCCGTGGATTATATGAATGCCTCCGAGAGTGTGCTCAATAATTCAGCAGTGGCAACCATTTTGGAGGCTATGGACAGATTTGATTCCTCTGATATTGCCTGTGAGTCGGAAGAAGTTGGACGGAAATCTGTAGCTTTGCGTTATTCGGGGTCCGGACTTAGGAGAAGGGATTATTTGAAGGAATTGAACTGCGAACAGGATGATGAGCTTGTGCGCATTGGAGCTGTTGCTGATTTTCTGCAGTTGGTTTCCCCCCTGAGCCCTACGTTGAAAGGTTGTGATTCAAAGGGCCATTCTGAAAGAAAATCTGGAGGAGGCAAAATAGAAGAACAGAGGATTTGCTCTGCTCCTTTATTTGTAGAATCATGTTGGAAGATAAGATCTATGCCCTGTTTTTCTCACTTTTCTTCTTATTCACTGATTGATTCATAG | 3363 | 40.83 | AALANITLYRPTPSSSIAHFSTSPDDLQGLVDPDESLPSEGSRAECFSAPELSLLRDSLLDSHADSPSSEPTLKSGNISNDAISILDTIRNTDDGFGDKTQRLLRRFRQNLNPDLVVEILGLLRNPELCVKFFLWAGRQIGYNHTASVYNALLDVYECGSYDRVPEKFLREIKDDDKEVLGKLLNVLIRKCCRNGFWNVALEELGRLKDFGYKPTRLTYNALIQVFLRADKLDTAYLVHREMSELGFNMDEFTLGLFAQALCKVGKWREALSLIEKEDFVPNTILYTKMISGLCDASFFEEAMDFLNRMRSSSCIPNAQTYKILLCGCLNKKQLGRCKRILSMMIAEGCFPTYTIFNSLVHAYCKSGDFSYAYKLLKKMEKCECKPGYVVYNIFIGGICNGKELPGPITFELAEKAYNEMCSSGTVLNKVNIVSFARCLCGFGKFEEAYKVIHEMMGNGFIPDTSTYSEVIGFMCNASRVENAFLLFKEMKGAGMVPDVYTYTILIDCFSKAGLIQQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFEVMIAKGCIPNVITYTALIDGYSKSGNIEKACQIYARMRGDADIPDVDMYFKTENNVSEKPNVVTYGALVDGLCKAHKVKDACDLLETMFSEGCEPNNIVYDALIDGFCKAAKLDEAQEVFVKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNVVIYTEMIDGLCKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMSSKGCSPNFVTYTVLINHCCASGRLDEAYALLDEMKQTYWPKHVSSYCKVVEGYNREFILSLGLLEEVEKNDATPIILLYRVLIDNFVKAGRLEVALELHKEVISASMSMAAKKNMYTTLIYSFSKAMKIDQAFELYNDMIRQGVIPDLGTFVDLIMGLVKVSRWEEALQLSDSICQMLYLSFFFFFFGSLPVDYMNASESVLNNSAVATILEAMDRFDSSDIACESEEVGRKSVALRYSGSGLRRRDYLKELNCEQDDELVRIGAVADFLQLVSPLSPTLKGCDSKGHSERKSGGGKIEEQRICSAPLFVESCWKIRSMPCFSHFSSYSLIDS | 1120 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 4900558 | 4905091 | + | Cp4.1LG12g04950.1 | Cpe12g00501 | 478498 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe12g00501 | 1120 | Gene3D | Tetratricopeptide repeat domain | 277 | 332 | IPR011990 | GO:0005515 | |
| Cpe12g00501 | 1120 | Gene3D | Tetratricopeptide repeat domain | 750 | 826 | IPR011990 | GO:0005515 | |
| Cpe12g00501 | 1120 | Gene3D | Tetratricopeptide repeat domain | 457 | 526 | IPR011990 | GO:0005515 | |
| Cpe12g00501 | 1120 | Gene3D | Tetratricopeptide repeat domain | 682 | 749 | IPR011990 | GO:0005515 | |
| Cpe12g00501 | 1120 | Gene3D | Tetratricopeptide repeat domain | 527 | 598 | IPR011990 | GO:0005515 | |
| Cpe12g00501 | 1120 | Gene3D | Tetratricopeptide repeat domain | 603 | 681 | IPR011990 | GO:0005515 | |
| Cpe12g00501 | 1120 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 568 | 602 | IPR002885 | - | |
| Cpe12g00501 | 1120 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL | 836 | 964 | - | - | |
| Cpe12g00501 | 1120 | Pfam | Pentatricopeptide repeat domain | 169 | 226 | IPR002885 | - | |
| Cpe12g00501 | 1120 | Pfam | Pentatricopeptide repeat domain | 677 | 732 | IPR002885 | - | |
| Cpe12g00501 | 1120 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 533 | 567 | IPR002885 | - | |
| Cpe12g00501 | 1120 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL | 69 | 835 | - | - | |
| Cpe12g00501 | 1120 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL | 836 | 964 | - | - | |
| Cpe12g00501 | 1120 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 282 | 316 | IPR002885 | - | |
| Cpe12g00501 | 1120 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 352 | 386 | IPR002885 | - | |
| Cpe12g00501 | 1120 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 689 | 723 | IPR002885 | - | |
| Cpe12g00501 | 1120 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 724 | 758 | IPR002885 | - | |
| Cpe12g00501 | 1120 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 759 | 793 | IPR002885 | - | |
| Cpe12g00501 | 1120 | Gene3D | Tetratricopeptide repeat domain | 831 | 1021 | IPR011990 | GO:0005515 | |
| Cpe12g00501 | 1120 | Gene3D | Tetratricopeptide repeat domain | 119 | 276 | IPR011990 | GO:0005515 | |
| Cpe12g00501 | 1120 | Gene3D | Tetratricopeptide repeat domain | 333 | 456 | IPR011990 | GO:0005515 | |
| Cpe12g00501 | 1120 | TIGRFAM | PPR: pentatricopeptide repeat domain | 218 | 250 | IPR002885 | - | |
| Cpe12g00501 | 1120 | TIGRFAM | PPR: pentatricopeptide repeat domain | 726 | 760 | IPR002885 | - | |
| Cpe12g00501 | 1120 | TIGRFAM | PPR: pentatricopeptide repeat domain | 621 | 654 | IPR002885 | - | |
| Cpe12g00501 | 1120 | TIGRFAM | PPR: pentatricopeptide repeat domain | 500 | 534 | IPR002885 | - | |
| Cpe12g00501 | 1120 | TIGRFAM | PPR: pentatricopeptide repeat domain | 355 | 386 | IPR002885 | - | |
| Cpe12g00501 | 1120 | TIGRFAM | PPR: pentatricopeptide repeat domain | 437 | 464 | IPR002885 | - | |
| Cpe12g00501 | 1120 | TIGRFAM | PPR: pentatricopeptide repeat domain | 466 | 499 | IPR002885 | - | |
| Cpe12g00501 | 1120 | TIGRFAM | PPR: pentatricopeptide repeat domain | 657 | 690 | IPR002885 | - | |
| Cpe12g00501 | 1120 | TIGRFAM | PPR: pentatricopeptide repeat domain | 535 | 569 | IPR002885 | - | |
| Cpe12g00501 | 1120 | TIGRFAM | PPR: pentatricopeptide repeat domain | 285 | 318 | IPR002885 | - | |
| Cpe12g00501 | 1120 | TIGRFAM | PPR: pentatricopeptide repeat domain | 796 | 822 | IPR002885 | - | |
| Cpe12g00501 | 1120 | TIGRFAM | PPR: pentatricopeptide repeat domain | 691 | 725 | IPR002885 | - | |
| Cpe12g00501 | 1120 | TIGRFAM | PPR: pentatricopeptide repeat domain | 320 | 352 | IPR002885 | - | |
| Cpe12g00501 | 1120 | TIGRFAM | PPR: pentatricopeptide repeat domain | 902 | 934 | IPR002885 | - | |
| Cpe12g00501 | 1120 | TIGRFAM | PPR: pentatricopeptide repeat domain | 761 | 794 | IPR002885 | - | |
| Cpe12g00501 | 1120 | TIGRFAM | PPR: pentatricopeptide repeat domain | 570 | 596 | IPR002885 | - | |
| Cpe12g00501 | 1120 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 619 | 653 | IPR002885 | - | |
| Cpe12g00501 | 1120 | Pfam | PPR repeat | 866 | 891 | IPR002885 | - | |
| Cpe12g00501 | 1120 | Pfam | PPR repeat | 437 | 460 | IPR002885 | - | |
| Cpe12g00501 | 1120 | Pfam | PPR repeat | 259 | 276 | IPR002885 | - | |
| Cpe12g00501 | 1120 | Pfam | PPR repeat family | 281 | 328 | IPR002885 | - | |
| Cpe12g00501 | 1120 | Pfam | PPR repeat family | 758 | 806 | IPR002885 | - | |
| Cpe12g00501 | 1120 | Pfam | PPR repeat family | 532 | 581 | IPR002885 | - | |
| Cpe12g00501 | 1120 | Pfam | PPR repeat family | 618 | 667 | IPR002885 | - | |
| Cpe12g00501 | 1120 | Pfam | PPR repeat family | 466 | 511 | IPR002885 | - | |
| Cpe12g00501 | 1120 | Pfam | PPR repeat family | 902 | 947 | IPR002885 | - | |
| Cpe12g00501 | 1120 | Pfam | PPR repeat family | 354 | 400 | IPR002885 | - | |
| Cpe12g00501 | 1120 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 317 | 351 | IPR002885 | - | |
| Cpe12g00501 | 1120 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 654 | 688 | IPR002885 | - | |
| Cpe12g00501 | 1120 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 899 | 933 | IPR002885 | - | |
| Cpe12g00501 | 1120 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 463 | 497 | IPR002885 | - | |
| Cpe12g00501 | 1120 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 428 | 462 | IPR002885 | - | |
| Cpe12g00501 | 1120 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 794 | 828 | IPR002885 | - | |
| Cpe12g00501 | 1120 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 498 | 532 | IPR002885 | - | |
| Cpe12g00501 | 1120 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL | 69 | 835 | - | - | |
| Cpe12g00501 | 1120 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 215 | 249 | IPR002885 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe12g00501 | - | - | - | mcha:111018584 | 1690.24 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe12g00501 | Cpe-Chr12:4900558 | Cpe20g00024 | Cpe-Chr20:127118 | 1.27E-40 | dispersed | |
| Cpe13g00480 | Cpe-Chr13:4986215 | Cpe12g00501 | Cpe-Chr12:4900558 | 8.74E-08 | dispersed | |
| Cpe15g00665 | Cpe-Chr15:7282260 | Cpe12g00501 | Cpe-Chr12:4900558 | 2.49E-12 | dispersed | |
| Cpe20g00721 | Cpe-Chr20:6135563 | Cpe12g00501 | Cpe-Chr12:4900558 | 5.82E-06 | dispersed | |
| Cpe12g00501 | Cpe-Chr12:4900558 | Cpe07g00593 | Cpe-Chr7:3974834 | 1.45E-76 | transposed |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi5g1146 | . | . | . | . | . | . | . | . | . | Cmo17g00570 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cla08g00440 | Cam08g0873 | Cec08g0452 | Cco08g0574 | Clacu08g0589 | . | Cre08g0412 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cma17g00588 | . | Car17g00544 | Cpe12g00501 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0009746 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 2 | 1 | 32 |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Cpe12g00501 | Cpe_Chr12 | FPKM | 0.241555 | 0.133462 | 3.104126 | 3.475799 | 5.467191 | 5.115835 | 4.914695 | 3.481133 | 3.742196 | 3.588313 |