Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00507 TCGTTTTTATTTCTTCTCTCTCTCTCGGAAAACCAAAACCCCACTCTGATTCTCTCTCTCATCCTCGTTTTCCCCCTTTCTCTCTCTCCATTACCGAACCCCCTTGAATTCCCATTCCCTAAATCGCTTCTCCCACATCCCAATTTTGACGATTTTCCTCCTTCCGCCATGGATTCTGAGGACGATCTTCATTACTCCACCGACGTTGAATCTGTCGATGATGATTGCGATTTCTACAGCGGTGAAATGGACATGGGTATGGGTTATTACAGCGATGACGACGATCCTGACGCTGAAGATTTCGTGGACGACGAAACCGATGATTACTTCGACTCACGTCGACGCGAGCAAAATTATACCATACTAAATGAGTCAGATATAAGACAACGCCAAGAGGACGACATTACAAGAATTTCTTCAGTACTTTCTATATCACGTGTAGCATCAATTGTGTTACTCCGCCACTTCAATTGGAGTGTTACTAAAGTCCATGATGAATGGTTTGCTGATGAAACTAGAGTAAGGAAGCAAGTTGGCTTGTTGGAAGCACCTGTTGTACATGTCCTAAATGCTAGAGAACGAACCTGTGGAATCTGTTTTGAGTCCTATCCAAATAGTAGGATCAAGTCAGCCGCCTGTGGTCATCCTTTCTGTGCCAACTGCTGGGAAGGCTACATTACCACATCAATTAATGACGGTCCTGGATGTCTGGCGTTGAGATGTCCTGATCCTTCTTGCAGTGCTGTGGTTGATCAAGACATGATTAACTCATTGGTCTCGGATGAAGACAGGAAGAAATATGCTCGTTACCTTCTTAGACTAAATGGTGCCCCGCACCTGGTTGTGAGCATGCTGTTCTCTTTGATGCCGGCAATGGAAATTATGATGTTTCTTGCCTCTGCACATATGGCTTTTGCTGGAAAGATATTAGCTAATTCCAAGCCTTGTCCAAAGTGCAAGCGGCCAATTGAGAAAAATCAAGGGTGCATGCACATGACTTGCACACCTCCGTGTACATTTGAATTTTGCTGGCTGTGTCTTGGTGCATGGTCCGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGCAACCGATATGAGGTAGCTAAGCAAGATGGTGTGTATGACGAGGCTGAGAAAAGAAGAGAAATGGCGAAGAATTCTTTGGAAAGATACACTCACTATTACGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCAATAGCAGATTTGCATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATATACACTGCACTCCTGAGTCTCAGCTAAAACGAGTTTTGAAATGGACTTATTCATATGGATATTACCTGCCGGAACAGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTACAAGGTGAGGCCGAGTCGGGATTAGAAAGGCTCCATCAATGCGCCGAAAAGGAATTGCTCCAGTTCGTCAGTGCAGAAGGTCCATCAAAAGAATTTAATGACTTCCGCACAAAGCTTGCTGGTCTAACCAGCGTCACTCGAAATTACTTTGAGAACCTAGTTAGAGCATTAGAGAACGGGCTTTCGGATGTGAATTCTCATGGAGCAAGCAGCGGCACAACGAGCTCAAAAAACACAGCAGGAAGTAGTAAAGGAGGAGGGAGAAGCGGACGAGGTAAGGGAATCAGTCGAATCGGGAGCTCAACCAGAAGTGGCGATAATGCTGCAACTCATTGGTCATGTGAACACTGTACGTTTGTGAACACAAAATCTAGTAGCACATGCGAGATGTGCCATCAACAACACCAATGA 1800 44.67 SFLFLLSLSENQNPTLILSLILVFPLSLSPLPNPLEFPFPKSLLPHPNFDDFPPSAMDSEDDLHYSTDVESVDDDCDFYSGEMDMGMGYYSDDDDPDAEDFVDDETDDYFDSRRREQNYTILNESDIRQRQEDDITRISSVLSISRVASIVLLRHFNWSVTKVHDEWFADETRVRKQVGLLEAPVVHVLNARERTCGICFESYPNSRIKSAACGHPFCANCWEGYITTSINDGPGCLALRCPDPSCSAVVDQDMINSLVSDEDRKKYARYLLRLNGAPHLVVSMLFSLMPAMEIMMFLASAHMAFAGKILANSKPCPKCKRPIEKNQGCMHMTCTPPCTFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKAIADLHQMQNVHIEKLSDIHCTPESQLKRVLKWTYSYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFVSAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSGTTSSKNTAGSSKGGGRSGRGKGISRIGSSTRSGDNAATHWSCEHCTFVNTKSSSTCEMCHQQHQ 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4972647 4981043 + Cp4.1LG12g05060.1 Cpe12g00507 478504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00507 599 MobiDBLite consensus disorder prediction 528 572 - -
Cpe12g00507 599 Coils Coil 375 395 - -
Cpe12g00507 599 Pfam IBR domain, a half RING-finger domain 312 354 IPR002867 -
Cpe12g00507 599 ProSitePatterns Zinc finger RanBP2-type signature. 575 594 IPR001876 -
Cpe12g00507 599 SUPERFAMILY RING/U-box 309 356 - -
Cpe12g00507 599 MobiDBLite consensus disorder prediction 528 548 - -
Cpe12g00507 599 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 277 IPR013083 -
Cpe12g00507 599 ProSiteProfiles TRIAD supradomain profile. 192 367 IPR044066 -
Cpe12g00507 599 Gene3D - 569 599 - -
Cpe12g00507 599 ProSiteProfiles Zinc finger RING-type profile. 196 242 IPR001841 -
Cpe12g00507 599 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 308 544 - -
Cpe12g00507 599 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 82 272 - -
Cpe12g00507 599 SUPERFAMILY Ran binding protein zinc finger-like 571 597 IPR036443 -
Cpe12g00507 599 Gene3D - 298 527 - -
Cpe12g00507 599 MobiDBLite consensus disorder prediction 558 572 - -
Cpe12g00507 599 CDD RING-HC_RBR_TRIAD1_like 196 246 - -
Cpe12g00507 599 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 308 544 IPR031127 GO:0004842|GO:0016567
Cpe12g00507 599 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 82 272 IPR031127 GO:0004842|GO:0016567
Cpe12g00507 599 SMART zf_4 573 597 IPR001876 -
Cpe12g00507 599 ProSiteProfiles Zinc finger RanBP2 type profile. 566 599 IPR001876 -
Cpe12g00507 599 SUPERFAMILY RING/U-box 193 273 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe12g00507 Cpe17g01099 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00830 Cpe-Chr7:7499261 Cpe12g00507 Cpe-Chr12:4972647 0 dispersed
Cpe12g00507 Cpe-Chr12:4972647 Cpe16g00224 Cpe-Chr16:4384069 2.49E-30 dispersed
Cpe12g00507 Cpe-Chr12:4972647 Cpe17g01099 Cpe-Chr17:8344123 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00507 K11968 - csv:101223037 887.486