Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe12g00507 | TCGTTTTTATTTCTTCTCTCTCTCTCGGAAAACCAAAACCCCACTCTGATTCTCTCTCTCATCCTCGTTTTCCCCCTTTCTCTCTCTCCATTACCGAACCCCCTTGAATTCCCATTCCCTAAATCGCTTCTCCCACATCCCAATTTTGACGATTTTCCTCCTTCCGCCATGGATTCTGAGGACGATCTTCATTACTCCACCGACGTTGAATCTGTCGATGATGATTGCGATTTCTACAGCGGTGAAATGGACATGGGTATGGGTTATTACAGCGATGACGACGATCCTGACGCTGAAGATTTCGTGGACGACGAAACCGATGATTACTTCGACTCACGTCGACGCGAGCAAAATTATACCATACTAAATGAGTCAGATATAAGACAACGCCAAGAGGACGACATTACAAGAATTTCTTCAGTACTTTCTATATCACGTGTAGCATCAATTGTGTTACTCCGCCACTTCAATTGGAGTGTTACTAAAGTCCATGATGAATGGTTTGCTGATGAAACTAGAGTAAGGAAGCAAGTTGGCTTGTTGGAAGCACCTGTTGTACATGTCCTAAATGCTAGAGAACGAACCTGTGGAATCTGTTTTGAGTCCTATCCAAATAGTAGGATCAAGTCAGCCGCCTGTGGTCATCCTTTCTGTGCCAACTGCTGGGAAGGCTACATTACCACATCAATTAATGACGGTCCTGGATGTCTGGCGTTGAGATGTCCTGATCCTTCTTGCAGTGCTGTGGTTGATCAAGACATGATTAACTCATTGGTCTCGGATGAAGACAGGAAGAAATATGCTCGTTACCTTCTTAGACTAAATGGTGCCCCGCACCTGGTTGTGAGCATGCTGTTCTCTTTGATGCCGGCAATGGAAATTATGATGTTTCTTGCCTCTGCACATATGGCTTTTGCTGGAAAGATATTAGCTAATTCCAAGCCTTGTCCAAAGTGCAAGCGGCCAATTGAGAAAAATCAAGGGTGCATGCACATGACTTGCACACCTCCGTGTACATTTGAATTTTGCTGGCTGTGTCTTGGTGCATGGTCCGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGCAACCGATATGAGGTAGCTAAGCAAGATGGTGTGTATGACGAGGCTGAGAAAAGAAGAGAAATGGCGAAGAATTCTTTGGAAAGATACACTCACTATTACGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCAATAGCAGATTTGCATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATATACACTGCACTCCTGAGTCTCAGCTAAAACGAGTTTTGAAATGGACTTATTCATATGGATATTACCTGCCGGAACAGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTACAAGGTGAGGCCGAGTCGGGATTAGAAAGGCTCCATCAATGCGCCGAAAAGGAATTGCTCCAGTTCGTCAGTGCAGAAGGTCCATCAAAAGAATTTAATGACTTCCGCACAAAGCTTGCTGGTCTAACCAGCGTCACTCGAAATTACTTTGAGAACCTAGTTAGAGCATTAGAGAACGGGCTTTCGGATGTGAATTCTCATGGAGCAAGCAGCGGCACAACGAGCTCAAAAAACACAGCAGGAAGTAGTAAAGGAGGAGGGAGAAGCGGACGAGGTAAGGGAATCAGTCGAATCGGGAGCTCAACCAGAAGTGGCGATAATGCTGCAACTCATTGGTCATGTGAACACTGTACGTTTGTGAACACAAAATCTAGTAGCACATGCGAGATGTGCCATCAACAACACCAATGA | 1800 | 44.67 | SFLFLLSLSENQNPTLILSLILVFPLSLSPLPNPLEFPFPKSLLPHPNFDDFPPSAMDSEDDLHYSTDVESVDDDCDFYSGEMDMGMGYYSDDDDPDAEDFVDDETDDYFDSRRREQNYTILNESDIRQRQEDDITRISSVLSISRVASIVLLRHFNWSVTKVHDEWFADETRVRKQVGLLEAPVVHVLNARERTCGICFESYPNSRIKSAACGHPFCANCWEGYITTSINDGPGCLALRCPDPSCSAVVDQDMINSLVSDEDRKKYARYLLRLNGAPHLVVSMLFSLMPAMEIMMFLASAHMAFAGKILANSKPCPKCKRPIEKNQGCMHMTCTPPCTFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKAIADLHQMQNVHIEKLSDIHCTPESQLKRVLKWTYSYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFVSAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSGTTSSKNTAGSSKGGGRSGRGKGISRIGSSTRSGDNAATHWSCEHCTFVNTKSSSTCEMCHQQHQ | 599 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 4972647 | 4981043 | + | Cp4.1LG12g05060.1 | Cpe12g00507 | 478504 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe12g00507 | 599 | MobiDBLite | consensus disorder prediction | 528 | 572 | - | - | |
Cpe12g00507 | 599 | Coils | Coil | 375 | 395 | - | - | |
Cpe12g00507 | 599 | Pfam | IBR domain, a half RING-finger domain | 312 | 354 | IPR002867 | - | |
Cpe12g00507 | 599 | ProSitePatterns | Zinc finger RanBP2-type signature. | 575 | 594 | IPR001876 | - | |
Cpe12g00507 | 599 | SUPERFAMILY | RING/U-box | 309 | 356 | - | - | |
Cpe12g00507 | 599 | MobiDBLite | consensus disorder prediction | 528 | 548 | - | - | |
Cpe12g00507 | 599 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 190 | 277 | IPR013083 | - | |
Cpe12g00507 | 599 | ProSiteProfiles | TRIAD supradomain profile. | 192 | 367 | IPR044066 | - | |
Cpe12g00507 | 599 | Gene3D | - | 569 | 599 | - | - | |
Cpe12g00507 | 599 | ProSiteProfiles | Zinc finger RING-type profile. | 196 | 242 | IPR001841 | - | |
Cpe12g00507 | 599 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 308 | 544 | - | - | |
Cpe12g00507 | 599 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 82 | 272 | - | - | |
Cpe12g00507 | 599 | SUPERFAMILY | Ran binding protein zinc finger-like | 571 | 597 | IPR036443 | - | |
Cpe12g00507 | 599 | Gene3D | - | 298 | 527 | - | - | |
Cpe12g00507 | 599 | MobiDBLite | consensus disorder prediction | 558 | 572 | - | - | |
Cpe12g00507 | 599 | CDD | RING-HC_RBR_TRIAD1_like | 196 | 246 | - | - | |
Cpe12g00507 | 599 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 308 | 544 | IPR031127 | GO:0004842|GO:0016567 | |
Cpe12g00507 | 599 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 82 | 272 | IPR031127 | GO:0004842|GO:0016567 | |
Cpe12g00507 | 599 | SMART | zf_4 | 573 | 597 | IPR001876 | - | |
Cpe12g00507 | 599 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 566 | 599 | IPR001876 | - | |
Cpe12g00507 | 599 | SUPERFAMILY | RING/U-box | 193 | 273 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe12g00507 | Cpe17g01099 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe07g00830 | Cpe-Chr7:7499261 | Cpe12g00507 | Cpe-Chr12:4972647 | 0 | dispersed | |
Cpe12g00507 | Cpe-Chr12:4972647 | Cpe16g00224 | Cpe-Chr16:4384069 | 2.49E-30 | dispersed | |
Cpe12g00507 | Cpe-Chr12:4972647 | Cpe17g01099 | Cpe-Chr17:8344123 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe12g00507 | K11968 | - | csv:101223037 | 887.486 |