Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00513 ATGGCTTCTAACCACGGTTCTAGCCGCGGCGCGTTACCCACCGGCTCTGGCTTGATCGTCAGTTTCGGCGAGATGCTGATCGATTTTGTTCCGACTGTTTCCGGCGTGTCTTTGGCAGAGGCGCCTGGATTTCTCAAAGCTCCCGGCGGCGCTCCGGCAAACGTTGCGATCGCTGTTAGCCGACTCGGCGGACGCGCTGCTTTCGTTGGTAAGCTTGGCGAAGATGAGTTTGGACGTATGTTGGAAGGAATCGTTAAGGAAAACGGCGTTTCCGCCGCCGGGATCCGATTCGATCAAGGCGCAAGAACTGCTTTGGCTTTTGTGACTCTACGCGCCGACGGTGAACGTGAGTTTATGTTCTACCGGAACCCTAGTGCCGATATGCTTCTCAAGCCGGAGGAGTTGGATCTCGATCTCATCAGATCCGCGAAGATCTTTCACTATGGATCGATAAGCTTGATCGTGGAGCCGTGCAGATCGGCCCATATGAAGGCGATGGAGGAAGCGAAGAAAGCAGGTGTTCTGCTTTCATACGATCCAAATCTGAGGCTGCCACTGTGGCCGTCAGCAAATGAGGCCCGTGAACAGATCAAGAGCATTTGGAACAAGGCCGACATCATCAAGGTGAGCGATGATGAGCTGAAATTCCTGACGCAAAGCGAGAAGGTGGATGATGAAACCGCCATGTCTCTGTGGCACGATGGGTTGAAGCTCCTCCTGGTCACTCTTGGCGAGAATGGGTGCAGATACTACACCAAGAACTTCCGGGGGTCTGTGGATCCATTCAAGGTTAAGGCAGTGGACACTACTGGTGCTGGTGACTCATTTGTGGGTGCTCTTCTTTGCAAGATTGTGGACGACCAATCTGTGCTCCAGGACGAGAAGAAATTGAGGGAGATACTAACGTTTGCGAATGCTTGTGGAGCCATTACAACAACCAAGAAGGGAGCAATCCCAGCTCTTCCATCGGAGGCAGACGTTGCAGCTTTGATCAAGGCTTCTCCGTAG 1008 53.08 MASNHGSSRGALPTGSGLIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVSRLGGRAAFVGKLGEDEFGRMLEGIVKENGVSAAGIRFDQGARTALAFVTLRADGEREFMFYRNPSADMLLKPEELDLDLIRSAKIFHYGSISLIVEPCRSAHMKAMEEAKKAGVLLSYDPNLRLPLWPSANEAREQIKSIWNKADIIKVSDDELKFLTQSEKVDDETAMSLWHDGLKLLLVTLGENGCRYYTKNFRGSVDPFKVKAVDTTGAGDSFVGALLCKIVDDQSVLQDEKKLREILTFANACGAITTTKKGAIPALPSEADVAALIKASP 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5094584 5096640 + Cp4.1LG12g05050.1 Cpe12g00513 478510

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00513 335 Pfam pfkB family carbohydrate kinase 18 323 IPR011611 -
Cpe12g00513 335 PANTHER BNAA04G18320D PROTEIN 22 328 - -
Cpe12g00513 335 PRINTS Ribokinase signature 44 63 IPR002139 GO:0016301
Cpe12g00513 335 PRINTS Ribokinase signature 199 214 IPR002139 GO:0016301
Cpe12g00513 335 PRINTS Ribokinase signature 239 250 IPR002139 GO:0016301
Cpe12g00513 335 Gene3D - 17 334 IPR029056 -
Cpe12g00513 335 SUPERFAMILY Ribokinase-like 19 331 IPR029056 -
Cpe12g00513 335 PANTHER HEXOKINASE FAMILY MEMBER 22 328 - -
Cpe12g00513 335 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 268 281 IPR002173 GO:0016773
Cpe12g00513 335 CDD bac_FRK 18 318 - -
Cpe12g00513 335 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 49 73 IPR002173 GO:0016773
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00513 K00847 E2.7.1.4, scrK; fructokinase [EC:2.7.1.4] - csv:101213366 608.986
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00513 Cpe17g01091 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00732 Cpe-Chr3:4477904 Cpe12g00513 Cpe-Chr12:5094584 1.19E-19 dispersed
Cpe05g00695 Cpe-Chr5:4263900 Cpe12g00513 Cpe-Chr12:5094584 1.07E-20 dispersed
Cpe11g00212 Cpe-Chr11:1141864 Cpe12g00513 Cpe-Chr12:5094584 1.83E-06 dispersed
Cpe12g00513 Cpe-Chr12:5094584 Cpe13g00056 Cpe-Chr13:427095 1.27E-106 dispersed
Cpe01g00591 Cpe-Chr1:3416495 Cpe12g00513 Cpe-Chr12:5094584 1.22E-17 transposed
Cpe08g01200 Cpe-Chr8:8804746 Cpe12g00513 Cpe-Chr12:5094584 9.20E-57 transposed
Cpe10g01162 Cpe-Chr10:8535330 Cpe12g00513 Cpe-Chr12:5094584 2.46E-48 transposed
Cpe17g00887 Cpe-Chr17:6890922 Cpe12g00513 Cpe-Chr12:5094584 3.14E-09 transposed
Cpe12g00513 Cpe-Chr12:5094584 Cpe17g01091 Cpe-Chr17:8268654 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1238 Blo01g00197 Blo12g00260 Bda03g00976 . Bpe04g00903 . . . Cmo08g00204 Cmo17g00583 . . . . . . . . . . . . . . Cla06g00083 Cam06g0141 Cec06g0090 Cco06g0087 Clacu06g0090 Cmu06g0088 Cre06g0861 . . . . . . . . . . . . Bpe05g00976 . . . Sed09g0418 . . . Cma17g00603 Car08g00178 Car17g00570 Cpe12g00513 Cpe17g01091 Bhi12g02522 Tan06g1586 Cmetu11g0190 . Hepe03g1051 . . . . . . . . . . . . Cme11g02461
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004086 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 2 4 1 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00513 Cpe_Chr12 FPKM 3.421019 3.221766 6.344209 5.593332 2.160251 2.150392 1.98458 8.91695 8.385344 9.178978