Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00537 ATGGACGGTATTCATGCGAGCGATGGACGGATGCATATGAACCATGCACAGCATTCGATGCACACGCAATCTGTGCAAGAGCAGGAACACCACGACTTTCATTACACGAGTAATGGGAATACATTGGCTGATGAGCATGAAAATGAAGGTCATGGCATTATGGTTGTGGAAAGGGAAGCTCCATCCGACCATGGTGACCTTCCTGAGAATCGTGGTGTAATGGTGGATCGTGGAGGTGATAACTGTGATCAACTCACCCTGTCTTATCAGGGTCAAGTTTATGTTTTCGACACTGTCTCGCCCGAAAAGGTTCAAGCCGTGTTATTATTATTGGGAGGTCGTGAAGTACCTATTCGTGTTCCCTCAATACCAATAACTAATCAACAAAATGATAGGCATCTCACTGATGAAGCGTTTAACCAGGCACTTGCCAATATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAACGTAATAAAGGCCAGTTCACATCCTCTAAACCAACTCATGAAGATTCATCATTGGCCATAACAAGTTGGGAATCAAATGAGAATTGGGCTACCGATGGAAATGGTTCCCAACAACAAGAAATTCTCTGCCGACATTGTGGCATTAGTGAGAAGTCAACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGCGGACTCATGTGGGCAAACAAGCTAACTGGAAAAGGGTTCTCTATCCTGGGAAGGAAGGGAGCTAGGCATTGCTGGGCATATCAAGGATTTGATATGCCCTCCAGATCCACGTGGGACATTTCTGATTGTCGTCTCTTTGCTGATTGGGTCAATAAAGGCACCTATGGTGCTTCCTGGTTTAAACAATATTTGGTTCAAGTATCATGGGGTAGTAATCCTTTCAAAGGAAGATGCAAGATTTTAAGGGAACTCTGCGGGACCTCTCAAAAGCACCAAACCAGGGTGGACAAGCTTCAACATTCAATAGAAATGAGGATGGAGATTCCGAGTCCAACCCAAAAGGTGCTTAGAATTGAGACAGATGTTTATGATTGCTGTTGCGGAAATTATACTGAGCTTAATCTCTCCTTACAGAGTAGTTTGAAACGGGTTTCTATCCCTTTGTACAGAGTCACTCCAATGGCTGACACTAGCGTTCGGGTTGAACCGAATCTGATCTGA 1275 44.39 MDGIHASDGRMHMNHAQHSMHTQSVQEQEHHDFHYTSNGNTLADEHENEGHGIMVVEREAPSDHGDLPENRGVMVDRGGDNCDQLTLSYQGQVYVFDTVSPEKVQAVLLLLGGREVPIRVPSIPITNQQNDRHLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPTHEDSSLAITSWESNENWATDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKLTGKGFSILGRKGARHCWAYQGFDMPSRSTWDISDCRLFADWVNKGTYGASWFKQYLVQVSWGSNPFKGRCKILRELCGTSQKHQTRVDKLQHSIEMRMEIPSPTQKVLRIETDVYDCCCGNYTELNLSLQSSLKRVSIPLYRVTPMADTSVRVEPNLI 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5509944 5515880 - Cp4.1LG12g09700.1 Cpe12g00537 478534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00537 424 SMART GATA_3 225 279 IPR000679 GO:0006355|GO:0043565
Cpe12g00537 424 Pfam GATA zinc finger 231 265 IPR000679 GO:0006355|GO:0043565
Cpe12g00537 424 ProSiteProfiles CCT domain profile. 155 197 IPR010402 GO:0005515
Cpe12g00537 424 Pfam tify domain 84 112 IPR010399 -
Cpe12g00537 424 ProSitePatterns GATA-type zinc finger domain. 231 258 IPR000679 GO:0006355|GO:0043565
Cpe12g00537 424 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 267 - -
Cpe12g00537 424 PANTHER GATA TRANSCRIPTION FACTOR 28 4 265 - -
Cpe12g00537 424 Gene3D - 221 281 IPR013088 GO:0006355|GO:0008270
Cpe12g00537 424 CDD ZnF_GATA 231 265 IPR000679 GO:0006355|GO:0043565
Cpe12g00537 424 PANTHER GATA TRANSCRIPTION FACTOR 28 4 265 IPR045280 GO:0006355
Cpe12g00537 424 Pfam CCT motif 155 197 IPR010402 GO:0005515
Cpe12g00537 424 SMART tify_2 78 113 IPR010399 -
Cpe12g00537 424 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe12g00537 Cpe17g00409 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00472 Cpe-Chr11:2698630 Cpe12g00537 Cpe-Chr12:5509944 2.40E-47 dispersed
Cpe12g00537 Cpe-Chr12:5509944 Cpe15g00382 Cpe-Chr15:5041268 1.94E-52 dispersed
Cpe12g00537 Cpe-Chr12:5509944 Cpe17g00409 Cpe-Chr17:3051029 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50320 PF06203 CCT 1.40E-14 CL0281 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00537 - - cmo:103500623 512.686