Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe12g00537 | ATGGACGGTATTCATGCGAGCGATGGACGGATGCATATGAACCATGCACAGCATTCGATGCACACGCAATCTGTGCAAGAGCAGGAACACCACGACTTTCATTACACGAGTAATGGGAATACATTGGCTGATGAGCATGAAAATGAAGGTCATGGCATTATGGTTGTGGAAAGGGAAGCTCCATCCGACCATGGTGACCTTCCTGAGAATCGTGGTGTAATGGTGGATCGTGGAGGTGATAACTGTGATCAACTCACCCTGTCTTATCAGGGTCAAGTTTATGTTTTCGACACTGTCTCGCCCGAAAAGGTTCAAGCCGTGTTATTATTATTGGGAGGTCGTGAAGTACCTATTCGTGTTCCCTCAATACCAATAACTAATCAACAAAATGATAGGCATCTCACTGATGAAGCGTTTAACCAGGCACTTGCCAATATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAACGTAATAAAGGCCAGTTCACATCCTCTAAACCAACTCATGAAGATTCATCATTGGCCATAACAAGTTGGGAATCAAATGAGAATTGGGCTACCGATGGAAATGGTTCCCAACAACAAGAAATTCTCTGCCGACATTGTGGCATTAGTGAGAAGTCAACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGCGGACTCATGTGGGCAAACAAGCTAACTGGAAAAGGGTTCTCTATCCTGGGAAGGAAGGGAGCTAGGCATTGCTGGGCATATCAAGGATTTGATATGCCCTCCAGATCCACGTGGGACATTTCTGATTGTCGTCTCTTTGCTGATTGGGTCAATAAAGGCACCTATGGTGCTTCCTGGTTTAAACAATATTTGGTTCAAGTATCATGGGGTAGTAATCCTTTCAAAGGAAGATGCAAGATTTTAAGGGAACTCTGCGGGACCTCTCAAAAGCACCAAACCAGGGTGGACAAGCTTCAACATTCAATAGAAATGAGGATGGAGATTCCGAGTCCAACCCAAAAGGTGCTTAGAATTGAGACAGATGTTTATGATTGCTGTTGCGGAAATTATACTGAGCTTAATCTCTCCTTACAGAGTAGTTTGAAACGGGTTTCTATCCCTTTGTACAGAGTCACTCCAATGGCTGACACTAGCGTTCGGGTTGAACCGAATCTGATCTGA | 1275 | 44.39 | MDGIHASDGRMHMNHAQHSMHTQSVQEQEHHDFHYTSNGNTLADEHENEGHGIMVVEREAPSDHGDLPENRGVMVDRGGDNCDQLTLSYQGQVYVFDTVSPEKVQAVLLLLGGREVPIRVPSIPITNQQNDRHLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPTHEDSSLAITSWESNENWATDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKLTGKGFSILGRKGARHCWAYQGFDMPSRSTWDISDCRLFADWVNKGTYGASWFKQYLVQVSWGSNPFKGRCKILRELCGTSQKHQTRVDKLQHSIEMRMEIPSPTQKVLRIETDVYDCCCGNYTELNLSLQSSLKRVSIPLYRVTPMADTSVRVEPNLI | 424 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 5509944 | 5515880 | - | Cp4.1LG12g09700.1 | Cpe12g00537 | 478534 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe12g00537 | 424 | SMART | GATA_3 | 225 | 279 | IPR000679 | GO:0006355|GO:0043565 | |
Cpe12g00537 | 424 | Pfam | GATA zinc finger | 231 | 265 | IPR000679 | GO:0006355|GO:0043565 | |
Cpe12g00537 | 424 | ProSiteProfiles | CCT domain profile. | 155 | 197 | IPR010402 | GO:0005515 | |
Cpe12g00537 | 424 | Pfam | tify domain | 84 | 112 | IPR010399 | - | |
Cpe12g00537 | 424 | ProSitePatterns | GATA-type zinc finger domain. | 231 | 258 | IPR000679 | GO:0006355|GO:0043565 | |
Cpe12g00537 | 424 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 226 | 267 | - | - | |
Cpe12g00537 | 424 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 4 | 265 | - | - | |
Cpe12g00537 | 424 | Gene3D | - | 221 | 281 | IPR013088 | GO:0006355|GO:0008270 | |
Cpe12g00537 | 424 | CDD | ZnF_GATA | 231 | 265 | IPR000679 | GO:0006355|GO:0043565 | |
Cpe12g00537 | 424 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 4 | 265 | IPR045280 | GO:0006355 | |
Cpe12g00537 | 424 | Pfam | CCT motif | 155 | 197 | IPR010402 | GO:0005515 | |
Cpe12g00537 | 424 | SMART | tify_2 | 78 | 113 | IPR010399 | - | |
Cpe12g00537 | 424 | ProSiteProfiles | Tify domain profile. | 78 | 113 | IPR010399 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe12g00537 | Cpe17g00409 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe11g00472 | Cpe-Chr11:2698630 | Cpe12g00537 | Cpe-Chr12:5509944 | 2.40E-47 | dispersed | |
Cpe12g00537 | Cpe-Chr12:5509944 | Cpe15g00382 | Cpe-Chr15:5041268 | 1.94E-52 | dispersed | |
Cpe12g00537 | Cpe-Chr12:5509944 | Cpe17g00409 | Cpe-Chr17:3051029 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50320 | PF06203 | CCT | 1.40E-14 | CL0281 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe12g00537 | - | - | cmo:103500623 | 512.686 |