Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00545 ATGAATTGGAGGTGGAGGGAGCTGATATCTCTCATCCTTCTTTGCATTCTAGGATGGAAGCCTAGCTCCATTCAAGGAGCCACAGATCCAACAGATGCCTCTGCTTTAAGAGTTTTGTACTCCAGCTTAAACTCGCCGCCTCAGTTAACCAAGTGGAACGCAAATGGCGATGATCCTTGTGGACAATCATGGAAGGGGATTACTTGTTCTGGCACACGGGTTACGGAAATAAACTTATCTGGCCTCGGGCTCAGTGGATCGCTCGGGTACCAGCTTGCAAGTATGACATCGGTAACCAACCTAGATGTGAGCAATAACAATATTGGAGGCGAGATAGTCTACCAACTTCCACCTAACCTGAAAAGACTAAATCTTGCTAGAAACAACTTCAATAAAGGCATCCCTTATTCCATTTCCTTGATGACTTCTCTTCAATACTTAAATATCAGTCATAATCAGCTTCAGAATCCATTGATTGATATGTTTGGGCAGCTTACTTCCCTATTCACATTGGATCTGTCTTTCAATGCTATGTCAGGCAACCTGCCTCAGAGTTTTAGCTCTCTTTCTGGCATCAGCACTATGAATTTGCAAAACAATCAGTTCACTGGCACAATTGATGTCCTTGCAACTCTTCCTCTTGATAACCTGAATGTTGAAAATAACCGTTTCACTGGCTGGATCCCTAATCAACTGAAGAACATTAATCTGCGGAAAGATGGGAACTCCTGGAGCTCAGGTCCTGCACCCCCTCCCCCACCTGGTACACCCCCAGCCACCAGAAGGAACCGGAGTCACAGTTCTGGTGGCAGTCCATCAAGTGGTGGTTCTAGTGAAGGTCAGAAATCAGGATTAAGTGGTGGTGCCATTGCAGGAATTATCATCTCTGTGCTTGTCGTTGGAGCGGTAGTAGCATTCTTCATCGTCAAGAGGAGATCGAAGAGATCATCTTCAGACATTGAAAGGCTTGATAATCAACCCCTGCAACCTCTTAAAATGACTGCAACACAAGAAATGAAGTCAGAAGAGACTTCCTCCACATTTTATCCAACAGCATTTGACACTTCTGCTGCAATTAATCTCAAACCCCCACCTATCGATCGTCATAAATCGTTTGATGAAGACGACTTCTCAAAACGAGCACCAGTCGTCAAGAAGGCCAGTGCAGCTCCTATTAATGTAAAGGCATATTCAATAGCAGACCTGCAAATGGCTACAGGCAGCTTCAATGTTGAAAATCTTCTTGGTGAGGGATCATTTGGACGTGTATATCGGGCTGAGTTTGATAACGGAAAGGTTCTTGCCGTGAAAAAGATAAACTCGTCTGCACTACCGAGGGAATTGGCTGAAGATTTCACTGACATTGTTTCTCAAGTCTCCCAGTTACACCATCCCAATATAACCGAGCTGGTGGGTTATTGCTCAGAGCATGGACAGCATTTGCTTGTGTATGAGTTCCATAGAAACGGCTCGCTTTACGACTTCTTGCATCTATCAGATGAATACAACAGACCTCTAATATGGAATTCCCGCATTAAGATTGCCTTGGGAACAGCGCGCGCATTAGAGTATCTTCATGAAGTATGCTCCCCGTCAATTGTTCATAGAAACATCAAGTCCGCTAACATATTGCTGGATGCCGAATTCAGCCCACACCTTTCTGATTCTGGACTGGAAAGCTTTGTACCTAATGCAGATCAGGCACTGGATGACGGTGCAAGTTCAGGATACACTGCCCCTGAGGTCACCATGTCCGGCCAATATACGTTGAAAAGCGATGTCTACAGTTTTGGTGTGGTCATGCTGGAACTCCTGACTGGACGCAAACCGTTCGATAGTTCAAGGTCGAGGATGGAGCAATCTTTGGTTCGATGGGCTACACCACAGCTTCATGACATTGATGCTTTAACGAAGATGGTAGATCCCGAGCTCAAAGGGCTATATCCAGTTAAATCTCTCTCTCGATTTGCAGACGTGATTGCGCTTTGCGTCCAGACTGAACCTGAGTTCAGACCTCCAATGTCGGAGGTGGTGGAAGCGTTGGTTCGTCTGGTACAGCGAGCTAACATGAGTAAGAGAACAGTTGGGAACGATAATGCAACATCTCCCAGGGGAGGAGAGATGGGTGGAGAGGACACACCATAG 2145 45.73 MNWRWRELISLILLCILGWKPSSIQGATDPTDASALRVLYSSLNSPPQLTKWNANGDDPCGQSWKGITCSGTRVTEINLSGLGLSGSLGYQLASMTSVTNLDVSNNNIGGEIVYQLPPNLKRLNLARNNFNKGIPYSISLMTSLQYLNISHNQLQNPLIDMFGQLTSLFTLDLSFNAMSGNLPQSFSSLSGISTMNLQNNQFTGTIDVLATLPLDNLNVENNRFTGWIPNQLKNINLRKDGNSWSSGPAPPPPPGTPPATRRNRSHSSGGSPSSGGSSEGQKSGLSGGAIAGIIISVLVVGAVVAFFIVKRRSKRSSSDIERLDNQPLQPLKMTATQEMKSEETSSTFYPTAFDTSAAINLKPPPIDRHKSFDEDDFSKRAPVVKKASAAPINVKAYSIADLQMATGSFNVENLLGEGSFGRVYRAEFDNGKVLAVKKINSSALPRELAEDFTDIVSQVSQLHHPNITELVGYCSEHGQHLLVYEFHRNGSLYDFLHLSDEYNRPLIWNSRIKIALGTARALEYLHEVCSPSIVHRNIKSANILLDAEFSPHLSDSGLESFVPNADQALDDGASSGYTAPEVTMSGQYTLKSDVYSFGVVMLELLTGRKPFDSSRSRMEQSLVRWATPQLHDIDALTKMVDPELKGLYPVKSLSRFADVIALCVQTEPEFRPPMSEVVEALVRLVQRANMSKRTVGNDNATSPRGGEMGGEDTP 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5586848 5593433 + Cp4.1LG12g09630.1 Cpe12g00545 478542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00545 714 SUPERFAMILY L domain-like 28 234 - -
Cpe12g00545 714 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Cpe12g00545 714 MobiDBLite consensus disorder prediction 692 714 - -
Cpe12g00545 714 CDD STKc_IRAK 415 684 - -
Cpe12g00545 714 PANTHER OS01G0253100 PROTEIN 19 708 IPR045271 GO:0004714|GO:0006468
Cpe12g00545 714 Gene3D Ribonuclease Inhibitor 29 251 IPR032675 -
Cpe12g00545 714 ProSitePatterns Protein kinases ATP-binding region signature. 415 438 IPR017441 GO:0005524
Cpe12g00545 714 ProSiteProfiles Protein kinase domain profile. 409 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe12g00545 714 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 19 708 - -
Cpe12g00545 714 Gene3D Transferase(Phosphotransferase) domain 1 488 703 - -
Cpe12g00545 714 MobiDBLite consensus disorder prediction 260 283 - -
Cpe12g00545 714 Pfam Leucine Rich repeat 96 114 IPR001611 GO:0005515
Cpe12g00545 714 Pfam Leucine Rich repeat 142 156 IPR001611 GO:0005515
Cpe12g00545 714 MobiDBLite consensus disorder prediction 238 283 - -
Cpe12g00545 714 Pfam Protein tyrosine and serine/threonine kinase 411 681 IPR001245 GO:0004672|GO:0006468
Cpe12g00545 714 SUPERFAMILY Protein kinase-like (PK-like) 391 681 IPR011009 -
Cpe12g00545 714 Gene3D Phosphorylase Kinase; domain 1 374 486 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g01752 Cpe12g00545 CCT
Cpe12g00545 Cpe17g00420 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00173 Cpe-Chr10:1029944 Cpe12g00545 Cpe-Chr12:5586848 1.25E-44 dispersed
Cpe12g00545 Cpe-Chr12:5586848 Cpe20g00626 Cpe-Chr20:3917624 0 dispersed
Cpe12g00545 Cpe-Chr12:5586848 Cpe17g00420 Cpe-Chr17:3144363 0 wgd
Cpe12g00545 Cpe-Chr12:5586848 Cpe02g01752 Cpe-Chr2:14286057 0 wgd
Cpe12g00545 Cpe-Chr12:5586848 Cpe03g01037 Cpe-Chr3:8458185 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62756 PF07714 PK_Tyr_Ser-Thr 4.20E-43 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00545 - - csv:101213107 1202.58