Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00550 ATGGAACAAATCATCGCCGCCGGAATCTCAAGCTCCGGCAACCAGCTCCCAAAGCCGAAGAACAATAGAAAAAAGCTCATAATCCTAGCCGTGTCTTCAACCCTCCTTCTGGTGGGCATCGTCGCCGGAGTGGTGAGCTCGAGAAACGGCGGCGGCGAGGAGGAGGAGGCTAAAAGCCATGCCATTGTGAAGAGCACGTGTAGTAGCACGTTGTATCCGGATCTGTGCTTTTCGAGCATTTTGAGGAGCGATGGGGCGATGAAGAGAGTTGGTAATAAAAAGGATGTGATTGAGGTGTCGATTAATATTACGGTTAAAGCGGTGGAGGAGAATTATTTTAGGGTGTTGAAATTGTGTGAGTTGAAGGATATTAGTCATAGGGAGAAGATTGCTCTTCATGATTGCCTTGAAACTATTGATGAGACGCTTGATGAGCTTCATAAGGCTACTGTTGACCTCCATGAGTACCCGAATAAGAAGTCCCTTAATCAACGTGCTGATGATCTCAAGACCTTGCTTAGTTCCGCTATTACTAATCAGGAGACATGCCTCGACGGGTTTTCCCACGACGAGGCGGACAAGAACCTGCGAGACAAGCTAAAAGAGGGCCAAATAGAGGTAGAGCGCATGTGCAGCAATGCGCTAGCCATGATTAAGAACATGACCGATACAGACATAGCCAACTACGAGGCCAAAATGGGAACAACAACAGCCAACAGAAAGCTCAAGGAAGAGAACAACGACGAGCAAATCCAGTGGCCGGAGTGGCTGTCAGCCGGAGACCGACGTCTGCTACAATCCTCCTCCGTGAAGGCGGACGTGGTCGTGGCGGCGGATGGCAGCGGGAACTTCAAGACAGTGGCGGCCGCCGTCGCCGCCGCCCCGGTAAAAAGTAGCAAGAGATATGTGATTAGAATTAAAGCTGGGGTTTATAGAGAGAATGTAGATGTGCCAAAGAAGAAGACGAATATAATGTTCATGGGAGATGGAAGAAGTAACACTATAATTACCGGTAGCCGGAATGTCGTCGACGGCAGCACCACTTTTAACTCTGCCACCGTCGGTAAGCTCAATTTTTACCCGTTTTTTCAGTAA 1095 48.95 MEQIIAAGISSSGNQLPKPKNNRKKLIILAVSSTLLLVGIVAGVVSSRNGGGEEEEAKSHAIVKSTCSSTLYPDLCFSSILRSDGAMKRVGNKKDVIEVSINITVKAVEENYFRVLKLCELKDISHREKIALHDCLETIDETLDELHKATVDLHEYPNKKSLNQRADDLKTLLSSAITNQETCLDGFSHDEADKNLRDKLKEGQIEVERMCSNALAMIKNMTDTDIANYEAKMGTTTANRKLKEENNDEQIQWPEWLSAGDRRLLQSSSVKADVVVAADGSGNFKTVAAAVAAAPVKSSKRYVIRIKAGVYRENVDVPKKKTNIMFMGDGRSNTIITGSRNVVDGSTTFNSATVGKLNFYPFFQ 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5615632 5617550 + Cp4.1LG12g09640.1 Cpe12g00550 478547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00550 364 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 62 222 IPR035513 -
Cpe12g00550 364 TIGRFAM PME_inhib: pectinesterase inhibitor domain 32 221 IPR006501 GO:0004857
Cpe12g00550 364 PANTHER PECTINESTERASE 36 358 - -
Cpe12g00550 364 Pfam Plant invertase/pectin methylesterase inhibitor 62 217 IPR006501 GO:0004857
Cpe12g00550 364 SMART PMEI_2 58 217 IPR006501 GO:0004857
Cpe12g00550 364 Gene3D Invertase/pectin methylesterase inhibitor family protein 57 222 IPR035513 -
Cpe12g00550 364 Gene3D - 266 359 IPR012334 -
Cpe12g00550 364 Pfam Pectinesterase 273 355 IPR000070 GO:0030599|GO:0042545
Cpe12g00550 364 CDD PMEI-like_3 65 222 - -
Cpe12g00550 364 ProSitePatterns Pectinesterase signature 1. 298 317 IPR018040 -
Cpe12g00550 364 PANTHER PECTINESTERASE 36 358 - -
Cpe12g00550 364 SUPERFAMILY Pectin lyase-like 269 354 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01886 Cpe-Chr1:16151549 Cpe12g00550 Cpe-Chr12:5615632 3.69E-30 dispersed
Cpe12g00550 Cpe-Chr12:5615632 Cpe12g00918 Cpe-Chr12:7922749 4.35E-58 dispersed
Cpe08g01273 Cpe-Chr8:9206612 Cpe12g00550 Cpe-Chr12:5615632 2.66E-39 transposed
Cpe12g00550 Cpe-Chr12:5615632 Cpe03g01033 Cpe-Chr3:8430848 2.74E-114 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00550 K01051 - csv:101212388 536.184