Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00555 ATGGTGTTTCATTCTCAAGTTCCTTCAAGATATACTTGTAGGCTTCTTGCAATCCCCTGTGGGAGTGTTCCTGAAGATAGATTTCAGAAGGATAATCCAGAGGATGAGCAGAGATATCCCTTTCCACAATTAAATTCTTCTGGGCGTTTGGAGGTCCAGGTTTTGCCCAATCCTAGTAAAGATGAGTTTTGTAGGACTATTGAATCGTATAGACCGAACATTGTTTACTTACAAGGGGAACGACTCGAGAATGATGAAGTTGGTTCTTTAGTATGGGAAGGTGTTGATTTGTTCACCGTAGAAGCGATTAGTGGGCTCTTTAGTTCTCCGTTGCCCACCACTGTATATTTGGAAATAGCCAATGGAGATGAAGTAGCTGATGCACTTCATTCCAAGGGTATTCCTTATGTCATATACTGGAGAAGCACATTTTCTTGTTATGCAGCATGCCATTTCCGTAATGCATTTCTTTCGGTTCTTCAGAGTTCATCTGCTCATACATGGGACGCATTTCAACTTGCACATGCTTCATTTAGGATGTATTGCTTGGGAAACAGCCTTGTTCTTCATAACAGTAGTCATAATGACGTTAGTGAAGATCTAGGACCACATCTTCTAGGAGAACGTTTGAGAATAAACGTTGAACCCCTTGAGAAAGAGGCAGCTGATGATGAAGAAAGTTCATCGGAAGTTCCTTCTGTTAGCATACTTGATCATGATGTTGAAATGAGATTTCTCATATGTGGTGAACCAAGGTCATTGGATGCTTACGTATTAGGAGCTCTGGAGGATGGTCTTAACGCTCTCTTGGACATTGAAATTCGGGGGAGCAAACTTCACGGCAAGTTCAGTGCCCCTCCTCCACCTCTCCAGGCAGGAATGCACTCTAATGGTGTTGTGACCATGCGCTGTGACATATCAACATGCAGTTTTGCCCACATCTCACTATTGGTGTCGGGTAGTGCACAAGCTTGTTTTGATGATCAGCTATTTGAAAATTATATAAAGAATGAGATTATAGACAGAAGCGAACCAGTACAGACACTAATAGATGGTGATGGAAGCAAACACTCGCGTGAGCCACGGAAATCTGCTTCAGTTGCTTGTGGGGCAACAGTTTTCGAAGTTAGCATGAAGGTCCCTTCGTGGGCATCTCAGATTTTGAGGCAGTTAGCCCCTGATGTTTCTTACCGAAGTTTAGTGGTACTTGGCATTGCCGGCATTCAGGGTTTGTCTGTAGCTTCTTTTGAGAAGGACGATGCTGAACGCCTCCTTTTCTTCGGTTCAAGGAAGCAAAGAGATTTATTTCTAAACAATTTAACCGATAGCACACCTCCAAGCTGGTTGAAACCACCTGCACCTAGAAAGAGATTAAGAAATGTGAAAGACATAAGCCTTGGTTCTCATGATGTTATTCAACATCTTAAGGTTTCGTCTGGTAGCAGAATAGACGGCGAGAACATGGAAATAGGATCGAGGAATGGTTTCAGCACTCCCATGTTTCCACTCCCGAGAAGGAGAGGAATGAAAATTGCCGCAATGAGGCCCATTCCTCACGTTAATCGCCATAAAATGATATCTTTTCGTGGAATAGCTGAGACAGGTGGGCACAATGGAGGCCTGTTTAAAGCTAGTGTTTCTTCTAGTAATTCAGCGAAGCATGTTACTGTAGGTTCAGCTTCAGTTTTGCAACAAAAAATGTTCTCAAGTGCATCTCAATATAAACAAATTATTCCCATGAATCCACTACCCTTGAAGAAGCATGGTTGTGGCAGAAGCCCTATACAGGCTTGCTTTGAGGAGGAATTTTTGAAGGATTTGCTGCAGTTTCTTGCTCTTCGAGGTCATAATCGACTTATTCCTCCTGGTGGGCTTGCTGAGTTTCCAGATGCAATACTCAATGGAAAGCGTCTCGACCTTTACAACCTGTACAAGGAGGTGGTTTCAAGAGGTGGCTTTCGTGTTGGAAATGGTATTAACTGGAAAGGACAGATCTTCTCAAAGATGCGCAATTACACCATGACCAATAGAATGACTGGTGTTGGAAACACGCTTAAAAGACATTATGAAACTTATCTTCTCGAGTATGAATTGGCGCATGAAGATGTAGATGGTGAATGTTGCCTGTTGTGTCACAGTAGTGCAGCGGGGGACTGGGTGAACTGTGGCATTTGTGGCGAGTGGGCTCACTTTGGTTGCGACCGAAGGCAGGGTCTCGGCGCATTTAAGGATTATGCAAAAACTGATGGATTAGAATACATATGTCCACACTGTAGTGTTGCTAATTACAAGAAGAAGAAAGTTGGTAATGGGTTGTCTCCAGGCTTATCCTCAAGACCAATATGA 2346 43.14 MVFHSQVPSRYTCRLLAIPCGSVPEDRFQKDNPEDEQRYPFPQLNSSGRLEVQVLPNPSKDEFCRTIESYRPNIVYLQGERLENDEVGSLVWEGVDLFTVEAISGLFSSPLPTTVYLEIANGDEVADALHSKGIPYVIYWRSTFSCYAACHFRNAFLSVLQSSSAHTWDAFQLAHASFRMYCLGNSLVLHNSSHNDVSEDLGPHLLGERLRINVEPLEKEAADDEESSSEVPSVSILDHDVEMRFLICGEPRSLDAYVLGALEDGLNALLDIEIRGSKLHGKFSAPPPPLQAGMHSNGVVTMRCDISTCSFAHISLLVSGSAQACFDDQLFENYIKNEIIDRSEPVQTLIDGDGSKHSREPRKSASVACGATVFEVSMKVPSWASQILRQLAPDVSYRSLVVLGIAGIQGLSVASFEKDDAERLLFFGSRKQRDLFLNNLTDSTPPSWLKPPAPRKRLRNVKDISLGSHDVIQHLKVSSGSRIDGENMEIGSRNGFSTPMFPLPRRRGMKIAAMRPIPHVNRHKMISFRGIAETGGHNGGLFKASVSSSNSAKHVTVGSASVLQQKMFSSASQYKQIIPMNPLPLKKHGCGRSPIQACFEEEFLKDLLQFLALRGHNRLIPPGGLAEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHEDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVANYKKKKVGNGLSPGLSSRPI 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5659218 5665707 + Cp4.1LG12g09460.1 Cpe12g00555 478552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00555 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 768 IPR042293 -
Cpe12g00555 781 SMART bright_3 598 702 IPR001606 GO:0003677
Cpe12g00555 781 ProSiteProfiles ARID domain profile. 597 701 IPR001606 GO:0003677
Cpe12g00555 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 701 764 IPR013083 -
Cpe12g00555 781 SUPERFAMILY FYVE/PHD zinc finger 693 761 IPR011011 -
Cpe12g00555 781 CDD ARID 600 697 - -
Cpe12g00555 781 CDD PHD_ARID4_like 707 758 - -
Cpe12g00555 781 Pfam ARID/BRIGHT DNA binding domain 601 697 IPR001606 GO:0003677
Cpe12g00555 781 Gene3D - 595 700 IPR036431 GO:0003677
Cpe12g00555 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 768 - -
Cpe12g00555 781 SUPERFAMILY ARID-like 600 712 IPR036431 GO:0003677
Cpe12g00555 781 SMART ARID_2 594 697 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00555 Cpe-Chr12:5659218 Cpe02g01754 Cpe-Chr2:14307058 0 wgd
Cpe12g00555 Cpe-Chr12:5659218 Cpe03g01028 Cpe-Chr3:8409324 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50321 PF01388 ARID 2.50E-15 CL0123 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00555 - - csv:101214243 1410.59