Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00556 ATGGCTGCTCTTCTTCGAGTGCTCTGTCTCTTCTCTCTCCTCCTCCCACTTTCTTCTTCTTCAATCGATAATTCCAAGAAGACCTTCATTGTGCAGGTTAACAGAGATGCCAGCAAGCCTTCCATTTTCCCAACACACAGGCACTGGTACGAGTCCTCTCTGGCCTCCATCTCTCCCAACAAGCCAACACCGTCACAACCAGATGCTTCTGGTAGCGATGGACCCATCATTCATACATATGAAACCCTCTTCCATGGCTTCTCTGCGAAGCTCTCACCTTTTGAAGTTCAGAACCTTCAAACCCTTCCCCATATCGCCTCCGTCATCCCTGAACAGGTTCGCCATCCTCATACAACTCGTTCCCCTGAGTTTCTTGGCCTTACGACCTCCGATAGTGCAGGGTTGCTTAAAGAGTCCGACTTTGGATCTGACCTTGTAATCGGAGTTATCGATACTGGTATTTGGCCGGAGAGGCAGAGCTTCAATGACCGCGATCTGGGTCCAATTCCTTCCAAATGGAAAGGCCGGTGCTTGGAGTCTAAACACTTCCCAGCCACCTCTTGCAACCGTAAGCTTATTGGGGCTCGATTCTTCTGTAGTGGGTATGAGGCCACCAATGGAAAGATGAACGAGACCACCGAGAATCGCTCGCCGCGTGATTCCGATGGTCATGGTACTCACACGGCGTCCATTGCTGCAGGTCGTTATGTGTTTCCAGCTTCGACTTTAGGCTATGCTCGTGGTAAAGCGGCCGGAATGGCTCCTAAGGCCCGTCTTGCTGCCTATAAAGTCTGTTGGAACGCTGGCTGCTACGACTCTGACATTCTTGCAGCTTTTGATGCTGCCGTTTCCGACGGTGTGGATGTGGTATCACTCAGCGTCGGCGGAACCGAAGGCGGTGATGGGTATTCTTCGTCTCTATGCTTAGAAGGCTCATTGAACCCAAATCTAGTGAAAGGGAAGATTGTAGTATGTGATAGGGGCATAAATTCAAGAGCTGCTAAAGGTGAGGTTGTGAAAAAGGCTGGAGGATTAGGAATGATTTTAGCAAATGGGGTCTTTGACGGTGAGGGTTTGGTAGCTGACTGCCATGTTCTACCCGCCACTGCCGTCGGTGCAGCCGGCGGCGACGAGATCCGCAAATATATTGCAGAAGCAGCGAAGTCTAAGTCACCGCCAACAGCTACAATTTTGTTCAAGGGAACTCGGCTTGGAGTCAGGCCAGCACCGGTTGTTGCTTCATTTTCAGCTCGAGGTCCTAATCCAGAGTCCCCTGAAATAGTGAAGCCTGATGTGATTGCGCCAGGATTGAACATTCTTGCCGCTTGGCCTGATAAAATTGGGCCCTCCGGAATTCCCACAGACAAGCGTACCACAGAGTTCAACATACTTTCCGGCACTTCCATGGCCTGTCCTCATGTCTCTGGCTTGGCTGCTCTGCTTAAAGCGGCACACCCAGGATGGAGTCCAGCCGCTATAAAATCAGCCCTAATGACCACAGCTTATACCTTGGACAACAGGGGTGAGACAATGTTAGACGAATCTTCAGGCAATACTTCTACGGTCTTAGACTTTGGAGCTGGTCATGTTCACCCACAAAAGGCAATGGACCCTGGCTTAATCTATGACCTGAACACCTATGATTATGTAGATTTCTTGTGTAACGCCAACTACACCACTAAGAACATCCAAGTTATTACGGGGAAGATTGCAGATTGCAGCGGCGCAAAAAGGGCTGGCCATACTGGGAATTTGAACTACCCTTTATTGTCTGTGGTGTTTCAACAATATGGTAAACAAAAGATGTCTACGCATTTCATTAGAACTGTGACCAACGTTGGGGACGCTAATTCTATCTACAAGGTAACAATCAAGCCACCAAGAGGAATTTCAGTGACTGTGGAGCCAGAAAAGCTGGCGTTTAGAAGGGTTGGGCAAAAATTGAGCTTCTTGGTTAGGGTCCAAGCAATGGCTTTAAGACTTTCCTCTGGAAGCTCTAGCATGAAGAGTGGTTCCATAGTTTGGACTGATGGAAAGCACGTAGTTACTAGTCCTTTGGTTGTCACCATGCAGCAACCCCTGCAGTAG 2088 49.14 MAALLRVLCLFSLLLPLSSSSIDNSKKTFIVQVNRDASKPSIFPTHRHWYESSLASISPNKPTPSQPDASGSDGPIIHTYETLFHGFSAKLSPFEVQNLQTLPHIASVIPEQVRHPHTTRSPEFLGLTTSDSAGLLKESDFGSDLVIGVIDTGIWPERQSFNDRDLGPIPSKWKGRCLESKHFPATSCNRKLIGARFFCSGYEATNGKMNETTENRSPRDSDGHGTHTASIAAGRYVFPASTLGYARGKAAGMAPKARLAAYKVCWNAGCYDSDILAAFDAAVSDGVDVVSLSVGGTEGGDGYSSSLCLEGSLNPNLVKGKIVVCDRGINSRAAKGEVVKKAGGLGMILANGVFDGEGLVADCHVLPATAVGAAGGDEIRKYIAEAAKSKSPPTATILFKGTRLGVRPAPVVASFSARGPNPESPEIVKPDVIAPGLNILAAWPDKIGPSGIPTDKRTTEFNILSGTSMACPHVSGLAALLKAAHPGWSPAAIKSALMTTAYTLDNRGETMLDESSGNTSTVLDFGAGHVHPQKAMDPGLIYDLNTYDYVDFLCNANYTTKNIQVITGKIADCSGAKRAGHTGNLNYPLLSVVFQQYGKQKMSTHFIRTVTNVGDANSIYKVTIKPPRGISVTVEPEKLAFRRVGQKLSFLVRVQAMALRLSSGSSSMKSGSIVWTDGKHVVTSPLVVTMQQPLQ 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5670271 5672634 + Cp4.1LG12g09470.1 Cpe12g00556 478553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00556 695 Gene3D - 553 691 - -
Cpe12g00556 695 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 16 117 IPR037045 -
Cpe12g00556 695 Gene3D Peptidase S8/S53 domain 118 552 IPR036852 GO:0004252|GO:0006508
Cpe12g00556 695 ProSitePatterns Serine proteases, subtilase family, serine active site. 466 476 IPR023828 -
Cpe12g00556 695 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.5 349 694 - -
Cpe12g00556 695 Pfam Fibronectin type-III domain 584 688 IPR041469 -
Cpe12g00556 695 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED 4 297 - -
Cpe12g00556 695 CDD Peptidases_S8_3 115 502 IPR034197 -
Cpe12g00556 695 PRINTS Subtilisin serine protease family (S8) signature 142 161 IPR015500 -
Cpe12g00556 695 PRINTS Subtilisin serine protease family (S8) signature 220 233 IPR015500 -
Cpe12g00556 695 PRINTS Subtilisin serine protease family (S8) signature 465 481 IPR015500 -
Cpe12g00556 695 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.5 4 297 - -
Cpe12g00556 695 Pfam Subtilase family 142 517 IPR000209 GO:0006508|GO:0008236
Cpe12g00556 695 SUPERFAMILY Subtilisin-like 140 543 IPR036852 GO:0004252|GO:0006508
Cpe12g00556 695 Pfam PA domain 301 379 IPR003137 -
Cpe12g00556 695 ProSiteProfiles Serine proteases, subtilase domain profile. 121 536 - -
Cpe12g00556 695 Pfam Peptidase inhibitor I9 28 115 IPR010259 -
Cpe12g00556 695 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED 349 694 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe12g00556 Cpe17g00429 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00556 Cpe-Chr12:5670271 Cpe05g01379 Cpe-Chr5:9709271 5.04E-90 dispersed
Cpe12g00556 Cpe-Chr12:5670271 Cpe17g00429 Cpe-Chr17:3208267 6.17E-163 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00556 - - cic:CICLE_v10024934mg 968.378