Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00570 ATGCAACATCAGAGATTGAAGCAACAACAGCAACAAGCTTTGATGCAGCAAGCTTTGCTTCAGCAACAGTCTCTTTACCATCCTGGTCTCTTAGCTCACCCTCAGCTCGAACCAATTCCAAGTGGAAATTTACCACCGGGTTTTGATCCAAGTACCTGCCGCAGTGTGTACGTAGGAAATGTACATACACAGGTAACTGAACCACTTCTTCAGGAGGTTTTTGGGAGTACAGGCGTTGTTGAAAGCTGCAAGCTTGTTAGAAAGGAGAAGTCATCCTATGGATTTATTCACTATTTTGATCGCAGATCAGCTGCTATGGCAATTTTGTCACTTAATGGGAGGCATTTGTTTGGGCAGCCTATCAAAGTAAATTGGGCTTATGCTAGTGGTCAGAGAGAGGATACATCAGGTCATTTCAACATCTTTGTGGGTGATCTTAGCCCTGAAGTTACTGATTCTACTTTGTTTGCATGCTTTTCTGTTTTCCCAAGCTGTTCCGATGCCAGAGTTATGTGGGATCAGAAGACTGGGCGTTCCAGGGGATTTGGTTTTGTTTCTTTTCGCAACCAACAGGATGCTCAAAGTGCAATAAATGACCTGACTGGTAAGTGGCTTGGGAGTAGACAGATTCGTTGCAACTGGGCTACAAAAGGTGCTGGATCCAATGACGACAAGCAGAGCTCAGATGTGAAAAGCATTGCGGAACTTACAAATGGATCATCTGGTGAGTGTTCATACCCCATGTTTAATGAGGTTTTCATTTCTTCCATTAGAAACNTGCTATGGCAATTTTGTCACTTAATGGGAGGCATTTGTAAGTTTGGGCAGCCTATCAAAGTAAATTGGGCTTATGCTAGTGGTCAGAGAGAGGATACATCAGGTCATTTCAACATCTTTGTGGGTGATCTTAGCCCTGAAGTTACTGATTCTACTTTGTTTGCATGCTTTTCTGTTTTCCCAAGCTGTTCCGATGCCAGAGTTATGTGGGATCAGAAGACTGGGCGTTCCAGGGGATTTGGTTTTGTTTCTTTTCGCAACCAACAGGATGCTCAAAGTGCAATAAATGACCTGACTGGTAAGTGGCTTGGGAGTAGACAGATTCGTTGCAACTGGGCTACAAAAGGTGCTGGATCCAATGACGACAAGCAGAGCTCAGATGTGAAAAGCATTGCGGAACTTACAAATGGATCATCTGAAGATGGTAAAGAGACGGTCAATAGCGATGCTCCAGAGAACAACCCTCAGTACACTACTGTTTATGTTGGCAATCTTGCTCCAGAGGCCACGCAGGTTGATCTTCATCGCCATTTTCATGCTCTTGGGGCTGGTGTGATTGAGGAGGTTCGCATCCAGCGCGATAAGGGCTTTGGTTTTGTTAGATATAGCACTCATGCTGAGGCTTCTTTGGCTATTCAGATGGGGAATACTCAGTCGTATCTTTGTGGCAAACAGATCAAGTGCTCTTGGGGAAGCAAGCCAACCCCACCTGGAACCATCTCGAACCCGCTTCCTCCCCCGGCAGCAGGTTCAATCCCAGGACTCTCAGCAACTGATATTTTAGCGTATGAGCGGCAACTGGCTATGAGCAAGATGGGTGGCGTCCATGCACTTATGCAGCCTCAGATACCACATCCTTTAAAGCAGGCAGCCATGGGGGGGATGGGTGCCGCTGGCTCAAGTCAGGCCATCTATGATGGTGGCTTCCAGAACGTTGCGGCAGCTCAGCAGCTCATGTATTATCAGTAA 1746 46.22 MQHQRLKQQQQQALMQQALLQQQSLYHPGLLAHPQLEPIPSGNLPPGFDPSTCRSVYVGNVHTQVTEPLLQEVFGSTGVVESCKLVRKEKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDSTLFACFSVFPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGSNDDKQSSDVKSIAELTNGSSGECSYPMFNEVFISSIRNXLWQFCHLMGGICKFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDSTLFACFSVFPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGSNDDKQSSDVKSIAELTNGSSEDGKETVNSDAPENNPQYTTVYVGNLAPEATQVDLHRHFHALGAGVIEEVRIQRDKGFGFVRYSTHAEASLAIQMGNTQSYLCGKQIKCSWGSKPTPPGTISNPLPPPAAGSIPGLSATDILAYERQLAMSKMGGVHALMQPQIPHPLKQAAMGGMGAAGSSQAIYDGGFQNVAAAQQLMYYQ 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5796751 5802363 - Cp4.1LG12g09350.1 Cpe12g00570 478567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00570 581 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 269 581 - -
Cpe12g00570 581 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 2 246 - -
Cpe12g00570 581 MobiDBLite consensus disorder prediction 373 418 - -
Cpe12g00570 581 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 122 IPR000504 GO:0003723
Cpe12g00570 581 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 211 IPR000504 GO:0003723
Cpe12g00570 581 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 419 485 IPR000504 GO:0003723
Cpe12g00570 581 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 368 IPR000504 GO:0003723
Cpe12g00570 581 SUPERFAMILY RNA-binding domain, RBD 52 217 IPR035979 GO:0003676
Cpe12g00570 581 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 269 581 - -
Cpe12g00570 581 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 2 246 - -
Cpe12g00570 581 SUPERFAMILY RNA-binding domain, RBD 409 501 IPR035979 GO:0003676
Cpe12g00570 581 CDD RRM1_TIA1_like 56 126 - -
Cpe12g00570 581 SUPERFAMILY RNA-binding domain, RBD 290 376 IPR035979 GO:0003676
Cpe12g00570 581 CDD RRM2_PUB1 297 371 - -
Cpe12g00570 581 Gene3D - 138 218 IPR012677 -
Cpe12g00570 581 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 128 IPR000504 GO:0003723
Cpe12g00570 581 SMART rrm1_1 418 488 IPR000504 GO:0003723
Cpe12g00570 581 SMART rrm1_1 55 124 IPR000504 GO:0003723
Cpe12g00570 581 SMART rrm1_1 140 213 IPR000504 GO:0003723
Cpe12g00570 581 SMART rrm1_1 297 370 IPR000504 GO:0003723
Cpe12g00570 581 Gene3D - 394 496 IPR012677 -
Cpe12g00570 581 CDD RRM3_TIA1_like 417 492 - -
Cpe12g00570 581 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 374 IPR000504 GO:0003723
Cpe12g00570 581 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 217 IPR000504 GO:0003723
Cpe12g00570 581 SMART rrm2_1 297 370 IPR003954 GO:0003676
Cpe12g00570 581 SMART rrm2_1 140 213 IPR003954 GO:0003676
Cpe12g00570 581 CDD RRM2_PUB1 140 214 - -
Cpe12g00570 581 Gene3D - 276 388 IPR012677 -
Cpe12g00570 581 Gene3D - 1 137 IPR012677 -
Cpe12g00570 581 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 417 492 IPR000504 GO:0003723
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g01768 Cpe12g00570 CCT
Cpe02g01768 Cpe12g00570 ECH
Cpe12g00570 Cpe17g00445 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01426 Cpe-Chr2:12380147 Cpe12g00570 Cpe-Chr12:5796751 8.07E-12 dispersed
Cpe07g00799 Cpe-Chr7:7129413 Cpe12g00570 Cpe-Chr12:5796751 7.49E-17 dispersed
Cpe07g01080 Cpe-Chr7:9553790 Cpe12g00570 Cpe-Chr12:5796751 6.42E-13 dispersed
Cpe11g01201 Cpe-Chr11:9795418 Cpe12g00570 Cpe-Chr12:5796751 1.55E-48 dispersed
Cpe12g00570 Cpe-Chr12:5796751 Cpe05g00248 Cpe-Chr5:1415027 1.51E-26 dispersed
Cpe20g00049 Cpe-Chr20:222483 Cpe12g00570 Cpe-Chr12:5796751 8.33E-12 dispersed
Cpe12g00570 Cpe-Chr12:5796751 Cpe17g00445 Cpe-Chr17:3318226 8.89E-47 wgd
Cpe12g00570 Cpe-Chr12:5796751 Cpe03g01015 Cpe-Chr3:8291590 7.81E-151 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00570 K13201 - csv:101207738 591.267