Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe12g00578 | ATGTCTGCCACCGTTCTTAGCGATACAATCCTAGAACCTCAAGCAGCATCGACGAAGCTAATCGCTCATATGGAGGTGGAGTTCGTTAAATGCTATTGCTGCGGACTCATAGAGGAATGCACACCAGCGTACATACAACGTGTTCGTGAACGTTACAATGAACATTGGATCTGCGGCCTCTGTTCCGAGGCAATCAACTACGAAATCCTCCGTTCTCGAAGCCTAATCACGGCGGAGGAAGCCATGGAAATACACATGAACCTCTGCAAAAAATTCACAGCGTTGAAACCACCTCCAAATCCTACGGTGCATTTGATATCAGCGATGCGACAGATTTTGAAGCGCAGTTTAGATTCTCCCTCAAGGGCCGTGAGGTCGATGCCAACAAGTCCGATGAAGAAAGCCTCTCGCCCGCCGCCACTCGCTCGCACGGGAAGCTGCCTATCTTCCCTCTCTGGTTCGTGA | 465 | 50.32 | MSATVLSDTILEPQAASTKLIAHMEVEFVKCYCCGLIEECTPAYIQRVRERYNEHWICGLCSEAINYEILRSRSLITAEEAMEIHMNLCKKFTALKPPPNPTVHLISAMRQILKRSLDSPSRAVRSMPTSPMKKASRPPPLARTGSCLSSLSGS | 154 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 5861897 | 5862361 | + | Cp4.1LG12g09290.1 | Cpe12g00578 | 478575 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe12g00578 | 154 | Pfam | Protein of unknown function (DUF1677) | 26 | 115 | IPR012876 | - | |
| Cpe12g00578 | 154 | PANTHER | DUF1677 FAMILY PROTEIN (DUF1677) | 10 | 151 | - | - | |
| Cpe12g00578 | 154 | PANTHER | OS01G0745000 PROTEIN | 10 | 151 | IPR012876 | - | |
| Cpe12g00578 | 154 | MobiDBLite | consensus disorder prediction | 117 | 154 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe02g01761 | Cpe12g00578 | CCT | |
| Cpe02g01761 | Cpe12g00578 | ECH | |
| Cpe12g00578 | Cpe17g00452 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe12g00578 | Cpe-Chr12:5861897 | Cpe02g01761 | Cpe-Chr2:14340568 | 5.67E-41 | dispersed | |
| Cpe12g00578 | Cpe-Chr12:5861897 | Cpe17g00452 | Cpe-Chr17:3369976 | 6.88E-93 | wgd | |
| Cpe12g00578 | Cpe-Chr12:5861897 | Cpe18g00311 | Cpe-Chr18:4669662 | 6.87E-37 | wgd | |
| Cpe12g00578 | Cpe-Chr12:5861897 | Cpe02g00298 | Cpe-Chr2:1561454 | 3.59E-41 | wgd | |
| Cpe12g00578 | Cpe-Chr12:5861897 | Cpe06g00266 | Cpe-Chr6:1440512 | 5.00E-41 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe12g00578 | - | - | csv:101205671 | 268.47 |