Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00580 ATGGCGAATTTCCATCGATGTTCTTCTGTTTTCTTCTTCTTCTTCCTCTGTTTTCTCCCTGTAATTTTCTCTCGATCGTCGGATAAACAAGAGACTTTCATCGTTCACGTTTCTAGATCGGAGAAGCCTTCTCTGTTCTCCTCTCATTATCGCTGGCACTCGTCAATTCTCGATTCACTCTCTCCTTCTTCTCGTCCGAGGAAGCTTCTTTACAACTATGAACGTGCCGCTAATGGTTTCGCCGCACGCATCACGGATGCTCAGGCGGCGGAGTTGCGTCGTGTTCCAGGTGTTGTTTCGGTTATTCCGGATCGGATGCGTCAGCTTCATACGACTCGGACGCCTCATTTTTTAGGTCTGGCGGATAACCTAGGGCTTTGGCCTGACACTAATTATGCGGATGATGTGATTATTGGCGTTCTTGATACCGGAATTTGGCCGGAGCGGCCGAGTTTCTCTGATGAGGGTTTGTCTCCGGTGCCGGCAAGTTGGAAAGGAACCTGCGAGGCTGGGGAGGGATTTTCGGCTACCACCTGTAATCGGAAGATTATTGGTGCGAGAGCGTTCTTTCACGGATACGAATCTAATATAAGAAGACCGCTTCACGGTTTGTCCGATTTCAAATCTGCTAGGGATTCGGACGGCCATGGAACTCACACGGCCTCTACGGCTGCAGGTTCGTTCGTTAAGAATGCTAGTTTTTTCCAATACGCTCGTGGAGAAGCCAGAGGCATGGCGAGCAGAGCTCGTATCGCTGCCTACAAGATCTGCTGGGAATTTGGTTGTTACGATTCTGACATCCTCGCCGCTATGGATCAGGCGATTGCCGATGGAGTCCACATCATCTCTCTCTCAGTCGGATCATCGGGCCGTGCCCCTGCGTACTATAGAGATTCTATCGCAATCGGAGCGTTTGGCGCGATGCAGCACGGCATTGTCGTCTCTTGCTCCGCCGGAAACTCCGGTCCCGGTCCTTACACGGCTGTGAATATCGCTCCATGGATCCTCACTGTTGGTGCATCCACAATTGACAGGGAGTTTCTCGCCGATGTGATTCTTGGAGACGGTAGGGTTTTTAGCGGCGTGTCGCTCTACTCCGGAGATCCTCTTGGCGATTCCAAGCTTCCGCTGGTCTACGGTGGAGATTGCGGTAATAGGTATTGTTATTCTGGATCCCTCGATCCGTCAAAAGTTGCCGGGAAAATTGTCGTGTGCGATCGAGGAGGGAACGCCAGAGTCGCCAAAGGAAGCGCCGTGAAATCCGCCGGCGGTCTTGGTGTGATACTCGCCAACACGGAGGAAAACGGCGAAGAGCTCTTAGCAGATTCTCATCTTATTCCGGGAACAATGATTGGAGAAATCGCCGGTAACAAGCTTAGAGACTACATCCATTCGGATCCGAATCCATCTGCTACAATCGTGTTTCGAGGAACTGTTATTAGCGATTCGCCGCCGTCTCCGAGAGTCGCCGCCTTCTCCAGCCGTGGTCCTAACTACCGAACGGCGGAGATTCTGAAACCGGACGTTATAGCTCCAGGAGTTAACATTTTGGCTGGCTGGAGCGGCTACAACAGTCCGTCTAGTCTTAGCATCGATACTCGAAGAGTTGAGTTCAATATCATCTCTGGAACTTCAATGTCCTGCCCTCACGTCAGCGGCGTCGCTGCATTGCTCCGGAAGGCTTTTCCGACATGGACACCGGCAGCAATCAAATCTGCTCTGATCACCACTTCTTACTCCTTGGACACTTCCGGCCGCCCAATCAAAGATCTCTCCACCAGCAACGACTCAAATCCGTTCGTCCATGGCGGCGGCCATATCGATCCCAACAAAGCTCTGAATCCAGGCCTGATTTATGATCTCAATCCTCAGGACTACGTTTCATTTCTCTGCTCAATCGGTTACGATTCTAGACAAATAGCTGTTTTCGTGAAGGATTCTTCATACTCTAACCTATGTGAACACAAATTGAGCAATCCCGGCAATCTGAACTACCCATCATTCGCGGTCGTGTTCACTTCCAACGGCGAAGAGGTGGTGAAATATACAAGAACTGTCACAAATGTAGGAGATAAAGCCGATGCTGTTTATGAAGTGAAAGTAGAAGCCCCTCAAGGCATTGAAATCAGTGTTCTTCCAAACAAACTGGAGTTCAGCGCAAAGAAGACAACACAGTCTTATGAGATTACATTCACCAAAATCAGTGGATTCAAGAACTCAGCAAGCTTCGGATCAATTCAATGGAGTGATGGAAGTCACATCGTTAGGAGTCCAATTGCTGTCTCATTCAACACTGCATCCATAGCTTCGATGTAA 2316 49.83 MANFHRCSSVFFFFFLCFLPVIFSRSSDKQETFIVHVSRSEKPSLFSSHYRWHSSILDSLSPSSRPRKLLYNYERAANGFAARITDAQAAELRRVPGVVSVIPDRMRQLHTTRTPHFLGLADNLGLWPDTNYADDVIIGVLDTGIWPERPSFSDEGLSPVPASWKGTCEAGEGFSATTCNRKIIGARAFFHGYESNIRRPLHGLSDFKSARDSDGHGTHTASTAAGSFVKNASFFQYARGEARGMASRARIAAYKICWEFGCYDSDILAAMDQAIADGVHIISLSVGSSGRAPAYYRDSIAIGAFGAMQHGIVVSCSAGNSGPGPYTAVNIAPWILTVGASTIDREFLADVILGDGRVFSGVSLYSGDPLGDSKLPLVYGGDCGNRYCYSGSLDPSKVAGKIVVCDRGGNARVAKGSAVKSAGGLGVILANTEENGEELLADSHLIPGTMIGEIAGNKLRDYIHSDPNPSATIVFRGTVISDSPPSPRVAAFSSRGPNYRTAEILKPDVIAPGVNILAGWSGYNSPSSLSIDTRRVEFNIISGTSMSCPHVSGVAALLRKAFPTWTPAAIKSALITTSYSLDTSGRPIKDLSTSNDSNPFVHGGGHIDPNKALNPGLIYDLNPQDYVSFLCSIGYDSRQIAVFVKDSSYSNLCEHKLSNPGNLNYPSFAVVFTSNGEEVVKYTRTVTNVGDKADAVYEVKVEAPQGIEISVLPNKLEFSAKKTTQSYEITFTKISGFKNSASFGSIQWSDGSHIVRSPIAVSFNTASIASM 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5872029 5874344 + Cp4.1LG12g09230.1 Cpe12g00580 478577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00580 771 Pfam Fibronectin type-III domain 662 761 IPR041469 -
Cpe12g00580 771 CDD Peptidases_S8_3 108 579 IPR034197 -
Cpe12g00580 771 Gene3D - 344 481 - -
Cpe12g00580 771 SUPERFAMILY PA domain 364 465 IPR046450 -
Cpe12g00580 771 Pfam Subtilase family 134 582 IPR000209 GO:0006508|GO:0008236
Cpe12g00580 771 Gene3D Peptidase S8/S53 domain 135 626 IPR036852 GO:0004252|GO:0006508
Cpe12g00580 771 ProSiteProfiles Serine proteases, subtilase domain profile. 108 613 - -
Cpe12g00580 771 Gene3D - 630 764 - -
Cpe12g00580 771 ProSitePatterns Serine proteases, subtilase family, serine active site. 543 553 IPR023828 -
Cpe12g00580 771 Pfam Peptidase inhibitor I9 32 110 IPR010259 -
Cpe12g00580 771 Pfam PA domain 375 459 IPR003137 -
Cpe12g00580 771 SUPERFAMILY Subtilisin-like 109 617 IPR036852 GO:0004252|GO:0006508
Cpe12g00580 771 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 20 765 IPR045051 -
Cpe12g00580 771 PRINTS Subtilisin serine protease family (S8) signature 133 152 IPR015500 -
Cpe12g00580 771 PRINTS Subtilisin serine protease family (S8) signature 212 225 IPR015500 -
Cpe12g00580 771 PRINTS Subtilisin serine protease family (S8) signature 542 558 IPR015500 -
Cpe12g00580 771 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.6 20 765 - -
Cpe12g00580 771 CDD PA_subtilisin_like 350 473 - -
Cpe12g00580 771 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 21 110 IPR037045 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe12g00580 Cpe17g00453 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00054 Cpe-Chr6:275921 Cpe12g00580 Cpe-Chr12:5872029 3.08E-176 dispersed
Cpe12g00580 Cpe-Chr12:5872029 Cpe16g00312 Cpe-Chr16:4999551 0 dispersed
Cpe12g00580 Cpe-Chr12:5872029 Cpe17g00453 Cpe-Chr17:3377017 0 wgd
Cpe12g00580 Cpe-Chr12:5872029 Cpe18g00316 Cpe-Chr18:4681499 0 wgd
Cpe12g00580 Cpe-Chr12:5872029 Cpe04g01018 Cpe-Chr4:9065992 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00580 - - csv:101205194 1338.17