Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00597 ATGGATGGAGGTGGCGCAGTGCACAATCGCTCAGTCGAAGATGTTTTCAGTGATTTTAGGGGCCGAAGAAACGGCGTCATCAAAGCTCTCACCGTAGATGTTGAAGAATTCTATCAACAATGTGATCCTGATAAGGAAAATCTATGCTTGTATGGATTTCCAAATGAAGTATGGGAAGTTAATTTACCTGCAGAAGAAGTTCCTCCAGAACTTCCAGAGCCGGCGTTGGGTATTAATTTTGCAAGAGATGGCATGCAAGAAAGGGATTGGTTGGCTTTGGTTGCTGTCCATAGTGACTCTTGGTTGCTCTCTGTTGCCTACTATTTTGGTGCGAGATTTGGATTTGATAAAGCTGATAGGAGGCGGCTTTTCAATATGATCAATGATTTGCCAACTGTATTTGAAGTAGTTACAGGTCTTGCGAAGAAACAAGTCAAGGAAAAGTCATCAAGTGCGAATGGTAGCAAATCCAAGTCGAGCCTTAAAACGAGGGAAACTGAAACGCAAGGAGTGTATGTGAGGCAGCCGGTGGCAAGGGAAGACGTAGAGGCGTTGTACGAAGAAGACGAAGATGAGCACGGCGACACCTTGTGTGGGGCGTGTGGTGAGAATTATGCAACAGATGAGTTTTGGATTTGCTGTGATATCTGTGAGAAATGGTTCCATGGAAAGTGTGTTAGAATAACTCCTGCAAAAGCCGTGCACATTAATCAGTACAAATGCCCATCCTGCAGCAGCAGCAAAAGAAGCCGCATTTAA 759 44.53 MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDPDKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAYYFGARFGFDKADRRRLFNMINDLPTVFEVVTGLAKKQVKEKSSSANGSKSKSSLKTRETETQGVYVRQPVAREDVEALYEEDEDEHGDTLCGACGENYATDEFWICCDICEKWFHGKCVRITPAKAVHINQYKCPSCSSSKRSRI 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5968899 5971941 + Cp4.1LG12g09120.1 Cpe12g00597 478594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00597 252 CDD PHD_AL_plant 197 245 IPR044104 -
Cpe12g00597 252 Pfam PHD-finger 198 246 IPR019787 -
Cpe12g00597 252 PANTHER CPG BINDING PROTEIN 6 251 IPR045104 GO:0006355|GO:0042393
Cpe12g00597 252 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Cpe12g00597 252 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Cpe12g00597 252 SUPERFAMILY FYVE/PHD zinc finger 187 248 IPR011011 -
Cpe12g00597 252 SMART PHD_3 197 245 IPR001965 -
Cpe12g00597 252 MobiDBLite consensus disorder prediction 147 168 - -
Cpe12g00597 252 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Cpe12g00597 252 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 6 251 - -
Cpe12g00597 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe12g00597 Cpe17g00469 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00651 Cpe-Chr14:4225669 Cpe12g00597 Cpe-Chr12:5968899 1.50E-81 dispersed
Cpe12g00597 Cpe-Chr12:5968899 Cpe17g00469 Cpe-Chr17:3498302 7.41E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50326 PF12165 Alfin 7.50E-68 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00597 - - csv:101222322 464.536