Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00598 ATGCTCGATAAATCCAAATTCTTCTTTCTCGGTGCGGCGTTGTTTTCAGGTGTTTCTGCGTCTCTTTACCCTATGGTAGTGTTGAAAACTCGACAACAGGTCGCTCATTCGCAGCTTTCTTGCATCAGAACCGCCTTCCACCTTGTCCGGCACGAAGGTTTCCGAGCTCTCTACCGTGGATTCGGGACTTCTCTGATGGGGACTATCCCGGCTAGGGCTCTGTACATGGGAGCTCTTGAGTTTACTAAGAGCTATGTAGGGACTGCCACTGTTAGAGTCGGATTTCCAGAGGCCACTGCCGCTACCATTGCTAATGCAGCTGCTGGATTGAGTGCTGCAATGGCTGCTCAGCTTGTGTGGACTCCTGTTGATGTTGTGAGTCAGAGACTCATGGTTCAAACTCATTTCAACAATCCTAATCCTTCCTCGACTCGTTACATCAATGGAGTCGATGCATTCCGTAAGATCCTCAATGCCGATGGTCTCCGAGGTCTCTACCGAGGTTTCGGGATATCGATTTTGACATACGCACCGTCGAATGCAGTGTGGTGGGCTTCTTATTATGTAGCACAGCGGTTAGTATGGGGTGGAATTGGATGCTATTACTCAAAGAAGCTTGATGAAGGCAATGAAAATGGAAGTTCAAACGTTTACAGACCGGATTCCAAGACGGTGATCGCAGTACAGGGCGCGAGCGCAGCAATGGCAGGGAGTATCTCGGCTCTGATAACAATGCCGCTCGATACAATCAAGACGAGATTGCAAGTTTTGGATGGGGATGAGAATGGTAGACGAGGGCCAACAATTGGACAGACATTGAGAAATCTGGTGAGGGAAGGCGGGTGGACGGCGTGCTACCGAGGGTTGGCGCCGCGATGCGCGTCGATGTCGATGTCTGCAACAACAATGATCACTACATATGAGTTCTTGAAACGGCTATCAACCAAGAATCGAGAGGGATTAACAAGCTGA 972 49.59 MLDKSKFFFLGAALFSGVSASLYPMVVLKTRQQVAHSQLSCIRTAFHLVRHEGFRALYRGFGTSLMGTIPARALYMGALEFTKSYVGTATVRVGFPEATAATIANAAAGLSAAMAAQLVWTPVDVVSQRLMVQTHFNNPNPSSTRYINGVDAFRKILNADGLRGLYRGFGISILTYAPSNAVWWASYYVAQRLVWGGIGCYYSKKLDEGNENGSSNVYRPDSKTVIAVQGASAAMAGSISALITMPLDTIKTRLQVLDGDENGRRGPTIGQTLRNLVREGGWTACYRGLAPRCASMSMSATTMITTYEFLKRLSTKNREGLTS 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5973612 5974583 - Cp4.1LG12g09040.1 Cpe12g00598 478595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00598 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 100 193 IPR018108 -
Cpe12g00598 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 224 313 IPR018108 -
Cpe12g00598 323 Gene3D Mitochondrial carrier domain 7 321 IPR023395 -
Cpe12g00598 323 PRINTS Mitochondrial carrier protein signature 58 76 IPR002067 GO:0055085
Cpe12g00598 323 PRINTS Mitochondrial carrier protein signature 109 131 IPR002067 GO:0055085
Cpe12g00598 323 Pfam Mitochondrial carrier protein 15 86 IPR018108 -
Cpe12g00598 323 Pfam Mitochondrial carrier protein 103 194 IPR018108 -
Cpe12g00598 323 Pfam Mitochondrial carrier protein 228 317 IPR018108 -
Cpe12g00598 323 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 1 319 - -
Cpe12g00598 323 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER-LIKE PROTEIN 1 319 - -
Cpe12g00598 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 3 85 IPR018108 -
Cpe12g00598 323 SUPERFAMILY Mitochondrial carrier 2 310 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00598 Cpe-Chr12:5973612 Cpe13g00986 Cpe-Chr13:8149902 1.14E-79 dispersed
Cpe12g00598 Cpe-Chr12:5973612 Cpe17g00470 Cpe-Chr17:3502403 0 wgd
Cpe12g00598 Cpe-Chr12:5973612 Cpe02g00281 Cpe-Chr2:1456039 1.30E-160 wgd
Cpe12g00598 Cpe-Chr12:5973612 Cpe06g00253 Cpe-Chr6:1347418 3.57E-153 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00598 K15121 - csv:101210602 554.673