Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00605 ATGACCGTTCAACCGCAGATTGGATTTGAGATTCTTGGCGAAGAAGATGCGTCAATAGTGGTGGTGGAGTTTGGAGCTATGGCAGCTCCCACGGCTGAAGAAGAAGTTAACGATTCCTTTACCACTTCCCACACGGTGATCGCCATTAGCAGGGACAAGAACAGTCAATATGCGGTTAAATGGGCTGTAGAAAACCTGTTCAACAGGAAGAACTCCGGCGATTGCATCCTCATCCATGTTCGTAGCCAGAGCATGCATCCCCAGGATGCGGATACGGTTCCTAAGGAGTATCGTCCACCGACTGAAGCTGAGTTGCATCAGTTCTTCCTTCCCTTCCGCGGATTCTGTGCACGAAAAGGAATAGTTGCAAAGGAGATAATCATACACGACATTGATGTTCCTAGTGCACTTATTGACTATGTCAGTAAACACTCCATTAGCAATATTGTTGTGGGTGCTTCCCACCGGAATGTTATTTTGAGGAAGTTCAAGCATCCCGATGTCCCAACGTGCTTACTCAAATCAACTCCAGAATCGTGCTCTGTATATGTCATAGGTAGAGGAAAAGTTCATACTAAGAGACTGAAAAAGAAACCGAAGTCACAAACTGATGGTACAGAAACACCACCTAGGGCTCCACATTTGAGCAGGTCTCTATCAAAAATACAAAAATCATCATACTCTAATATCTCAGGACTCTCTGAAGATAAAAGCAGTTCTGGCACCAGTTATGATTCAATGTCAGGCATCAGTGACCATTCGGGGCCTTTCAAATCGTTTGAAACATCCTTTGAGAACTTAGAATCTTTCACCTCCTCAGAGACTAATTCGAGGAGCTTTGTGTCCTCTAACACCCCATCTTCCATAGAAGCTGAGATGAGAAAGTTGAGGTTGGAACTCAAACAAACAATGGAAATGTATGAATTAGCTTCCAATGAAGCTATAATAGCAAAACAAGAGGCAAAAGAAATGCAACAATTGAAGATGGAAATGGTAGAAGACCAAAAAATTGAGCGTGGTAAATCTTCAGAAGAGGCTATAACAACATTGGCCGAGTTTGAGAAGCAGAAGAACAAGGCTGCGACAGAAGCAGCTGTAATGGCACAGAAGTTGGCAGAATTAGAGACCCAGAAAAAACGAGCTATTGTTGAAAATAAAGCTAGGATTGAGGCAGAGGAGATGAAGAAAGCAATTGATTTATTGGAACGCAGTAATGTCTGCTATAAACGATACAGAATTGACGAGATCGAAGCTGCAACAGATCATTTTAATGAGTCTAATAAGATTGGTGAAGGGGGATATGGACCTGTTTACCAAGCCATACTCGATCATACTTCTGTTGCCATTAAGATCTTGAGACCAGATAGATCTCATGGGCAGAAACAATTCCAGCAAGAGATTGAGGTTCTAAGCCGCATGAGGCATCCACACATGGTTCTCCTCTTAGGTGCCTGCCCAGAAAACGGTTGCCTCATTTATGAATATATGGAAAACGGGAGCTTAGAAGACCGTCTTTTCCGAAAGGATAACACTCCTCCAATCCCTTGGAGTACCCGTTTCAGGATAGCTGCTGACATTGCCACTGCCTTACTCTTCCTTCACCAAATGAAGCCAGAACCTGTGGTGCATCGCGATCTCAAGCCAGCCAACATTCTCTTAGATCACAACTACGTGGGCAAAATAGGTGATGTGGGTTTGGCCAGGCTAGTTCCACCATCGGTTGCCGATAGCGTCACTCAATATCACATGACTGCTGCAGCTGGAACATTCTGTTACATTGATCCAGAATATCAACAAACAGGAATGTTGGGTGTGAAGTCAGATATTTACTCATTTGGTGTTCTGCTACTCCAGCTCATCACTGCAAGGTCACCGATGGGTCTTTCATATCAGGTCGAGGAGGCCATTGAACACGGCACATTTCCACAGGTACTTGATCCTACAGTTACAGATTGGCCTATTGAAGATACTCTTGGACTCGCTCAATTAGCTCTGCAGTGCTGTGAGCTAAGGAAAAGAGACAGGCCTGATCTCCATACAGTTCTATTGCCCGAACTGGTCCGGTTAAAAAATCTAGGATTGAGCAAAATGCCACCAAAGGGAAAACTCCCAGATGTCTGCGAATCACGTGATCGACCGGCCTCTAACTCTAACTCAGCTCCAAAATTAAGGAGATCAGGACATGAGACCTCGAAGAACGGTGATGCGGAAGTCTCAGCTATCCCACTGAGTGGAAAACGGGTTGATGAACAGACAAAGAAGCAGCAAAGCCCTCAATGCTGTTGGTCATTTGTAAGTTGTGCTTCTGCTCAAAATACTTACCATTTTCATAAAGAGAAATCA 2343 44.17 MTVQPQIGFEILGEEDASIVVVEFGAMAAPTAEEEVNDSFTTSHTVIAISRDKNSQYAVKWAVENLFNRKNSGDCILIHVRSQSMHPQDADTVPKEYRPPTEAELHQFFLPFRGFCARKGIVAKEIIIHDIDVPSALIDYVSKHSISNIVVGASHRNVILRKFKHPDVPTCLLKSTPESCSVYVIGRGKVHTKRLKKKPKSQTDGTETPPRAPHLSRSLSKIQKSSYSNISGLSEDKSSSGTSYDSMSGISDHSGPFKSFETSFENLESFTSSETNSRSFVSSNTPSSIEAEMRKLRLELKQTMEMYELASNEAIIAKQEAKEMQQLKMEMVEDQKIERGKSSEEAITTLAEFEKQKNKAATEAAVMAQKLAELETQKKRAIVENKARIEAEEMKKAIDLLERSNVCYKRYRIDEIEAATDHFNESNKIGEGGYGPVYQAILDHTSVAIKILRPDRSHGQKQFQQEIEVLSRMRHPHMVLLLGACPENGCLIYEYMENGSLEDRLFRKDNTPPIPWSTRFRIAADIATALLFLHQMKPEPVVHRDLKPANILLDHNYVGKIGDVGLARLVPPSVADSVTQYHMTAAAGTFCYIDPEYQQTGMLGVKSDIYSFGVLLLQLITARSPMGLSYQVEEAIEHGTFPQVLDPTVTDWPIEDTLGLAQLALQCCELRKRDRPDLHTVLLPELVRLKNLGLSKMPPKGKLPDVCESRDRPASNSNSAPKLRRSGHETSKNGDAEVSAIPLSGKRVDEQTKKQQSPQCCWSFVSCASAQNTYHFHKEKS 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6036061 6040583 + Cp4.1LG12g08990.1 Cpe12g00605 478602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00605 781 Gene3D Phosphorylase Kinase; domain 1 393 495 - -
Cpe12g00605 781 Gene3D Transferase(Phosphotransferase) domain 1 496 692 - -
Cpe12g00605 781 SUPERFAMILY Protein kinase-like (PK-like) 405 682 IPR011009 -
Cpe12g00605 781 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 44 184 - -
Cpe12g00605 781 SMART serkin_6 423 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe12g00605 781 Coils Coil 350 404 - -
Cpe12g00605 781 CDD STK_N 45 188 - -
Cpe12g00605 781 MobiDBLite consensus disorder prediction 191 249 - -
Cpe12g00605 781 Gene3D HUPs 32 186 IPR014729 -
Cpe12g00605 781 Coils Coil 293 327 - -
Cpe12g00605 781 Pfam Protein kinase domain 423 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe12g00605 781 PANTHER OS02G0152300 PROTEIN 44 710 - -
Cpe12g00605 781 MobiDBLite consensus disorder prediction 700 751 - -
Cpe12g00605 781 MobiDBLite consensus disorder prediction 218 249 - -
Cpe12g00605 781 ProSitePatterns Serine/Threonine protein kinases active-site signature. 541 553 IPR008271 GO:0004672|GO:0006468
Cpe12g00605 781 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 44 710 - -
Cpe12g00605 781 Pfam Universal stress protein family 46 159 IPR006016 -
Cpe12g00605 781 ProSiteProfiles Protein kinase domain profile. 423 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00362 Cpe-Chr11:1989790 Cpe12g00605 Cpe-Chr12:6036061 0 dispersed
Cpe11g00655 Cpe-Chr11:4355648 Cpe12g00605 Cpe-Chr12:6036061 5.45E-21 dispersed
Cpe11g01178 Cpe-Chr11:9672096 Cpe12g00605 Cpe-Chr12:6036061 3.58E-146 dispersed
Cpe12g00605 Cpe-Chr12:6036061 Cpe13g00095 Cpe-Chr13:682750 9.51E-09 dispersed
Cpe12g00605 Cpe-Chr12:6036061 Cpe17g00472 Cpe-Chr17:3514912 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62758 PF00069 Pkinase 5.40E-42 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00605 - - bhj:120085014 1177.93