Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00607 ATGGCAGGTTTGGCTCCAGAAGGATCCCAGTTTGATTCTCGCCAATATGATACTAAAATGAATGAGATTCTTTCGGCAGAAGGCCAGGAATTTTTTACCTCATATGATGAAGTTTATGAAAGTTTTGATTCGATGGGGCTGCAAGAAAACCTCCTTAGAGGCATTTATGCCTATGGTTTCGAGAAGCCATCTGCAATTCAGCAAAGAGGTATTGTTCCCTTCTGCAAAGGCCTTGATGTGATTCAGCAGGCTCAGTCTGGAACTGGGAAGACTGCAACCTTTTGCTCTGGAATATTGCAGCAACTTGATTATGGTCTAGTCCAGTGCCAGGCTTTAGTTTTGGCTCCGACTAGGGAGCTTGCTCAACAAATTGAGAAGGTTATGAGAGCTCTTGGAGATTATCTTGGTGTTAAGGTACATGCTTGTGTGGGAGGGACAAGCGTCCGTGAGGATCAACGCATTCTTCAAGCTGGTGTTCACGTCGTAGTTGGAACACCTGGTCGTGTGTTTGACATGTTAAGGAGGCAATCTCTTCGTCCGGATTCTATTAAGATGTTTGTATTGGATGAAGCTGATGAAATGCTTTCTCGAGGTTTCAAAGATCAGCAAGTCTCCCTTGTTATAAATTATGATTTGCCAACCCAACCAGAGAATTATCTTCATCGAATTGGTCGAAGTGGGCGTTTCGGAAGAAAAGGTGTGGCCATTAATTTTGTTACAAGCGATGATGAGAGAATGCTTTTTGATATTCAGAAGTTCTATAATGTGGTCGTTGAGGAGCTGCCAGCCAATGTTGCTGATCTCCTATGA 810 43.33 MAGLAPEGSQFDSRQYDTKMNEILSAEGQEFFTSYDEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDSIKMFVLDEADEMLSRGFKDQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTSDDERMLFDIQKFYNVVVEELPANVADLL 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6047211 6049731 + Cp4.1LG12g09000.1 Cpe12g00607 478604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00607 269 CDD SF2_C 194 239 - -
Cpe12g00607 269 SMART helicmild6 125 230 IPR001650 -
Cpe12g00607 269 Pfam DEAD/DEAH box helicase 65 206 IPR011545 GO:0003676|GO:0005524
Cpe12g00607 269 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 227 IPR014001 -
Cpe12g00607 269 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 101 269 IPR001650 -
Cpe12g00607 269 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 202 269 - -
Cpe12g00607 269 Gene3D - 10 225 IPR027417 -
Cpe12g00607 269 PANTHER RNA HELICASE 202 269 - -
Cpe12g00607 269 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 24 202 - -
Cpe12g00607 269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 210 IPR027417 -
Cpe12g00607 269 SMART ultradead3 59 253 IPR014001 -
Cpe12g00607 269 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
Cpe12g00607 269 PANTHER RNA HELICASE 24 202 - -
Cpe12g00607 269 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Cpe12g00607 269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 267 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00607 Cpe-Chr12:6047211 Cpe03g01722 Cpe-Chr3:13059769 4.71E-14 dispersed
Cpe12g00607 Cpe-Chr12:6047211 Cpe17g00474 Cpe-Chr17:3530045 0 wgd
Cpe12g00607 Cpe-Chr12:6047211 Cpe02g01732 Cpe-Chr2:14178581 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00607 K03257 - csv:101221456 397.127