Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00615 ATGATGATGAAAGGGAATTTTTTGTCTCAACAACAACATCAACAACACCAAGTTTTAATGGATGAAAATTTGTCCAATTTGACTTCTGCATCTGGTGAAGCTACTGCTAGTGTTTCTTCTGCTAATCACTATTTTGATCCTCAATCCCAACACCCGCCGCCGCCGCCGCCACCGCCTCCGCCTCCTCCTCCGAAGAAGAAACGCAACCTCCCCGGAAACCCCGACCCAGATGCGGAAGTGATAGCATTATCGCCGAGAACACTAATGGCGACGAATCGATTCGTATGCGAGATCTGCAACAAAGGGTTTCAAAGAGATCAGAATCTTCAACTACATAGAAGAGGACACAATCTACCATGGAAGCTGAAGCAAAGATCAAACAAAGAAGTGGTGAAGAAGAAGGTATATGTGTGCCCAGAGAGCAGCTGCGTCCACCATGACCCATCAAGAGCCCTTGGAGACCTCACAGGTATCAAAAAGCACTTCTACAGAAAGCATGGCGAAAAGAAGTGGAAATGCGATAAGTGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAATCTGTGGCACTAAGGAGTACAGATGTGACTGTGGAACACTGTTTTCAAGGAGAGACAGTTTTATAACTCATAGAGCTTTCTGCGATGCATTGGCGGATGAAAGTGCAAGATCAGCTATGGCGTTAAACCCGCTAATTTCTTCTTATAATAATAATAATAATAATTTTGTTATTAAACGGGACTTTAGTAATGGTAACAATATGAGGGCGGAGATTCCACCGTGGCTACACTCGAATGATCTTCGAGGGGAAATTTTTATTGGGAGTTGTCAAGACGAGCATCCGCACCAGAATCATGAAACCCTAAACCCGAACGGGCACGGGCACGGACACGGGTGCGGGGCGAGTATTGGACTTCCTCCTCCTTCTTCATATCAGTGTTCTTCGGTTTCTTCTCCTCATATTTCAGCCACTGCATTGCTGCAGAAGGCAGCTCAAATGGGTGCCACCATGAGTAGTACCACTACCACGAGTGGCTCTATGCAAAGGCCCCACAAGATGGTTCACGTGTCTACAGCTGCGGCGGTTTCAGCTTCGGAACCTGCCACTTTTCTTCACGACATGATAAATTCCCTCTCTTCTGCTTCGGCTTCTCATCCCTTCCTACAAGATTCCTCCTTTAACGACGTCACGGCGTTCCCCGCCATGCATCACCACATCGTCCCCGCTACTGCCACCACCACGGTCACCGCCGCTTCGGGCGGTCGAAGCGACGGTTTAACGAGGGATTTTTTGGGGCTTCGCCCTCTTTCCCATGGAGATATTCTAAGCCTTACTGGTTTTGGGAACTGCATTGTTCCTAATTCCTCCAATCTTCAAAGTCAAATCCAGAAGCCATGGCAGGGTTAG 1422 47.33 MMMKGNFLSQQQHQQHQVLMDENLSNLTSASGEATASVSSANHYFDPQSQHPPPPPPPPPPPPPKKKRNLPGNPDPDAEVIALSPRTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVVKKKVYVCPESSCVHHDPSRALGDLTGIKKHFYRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSRRDSFITHRAFCDALADESARSAMALNPLISSYNNNNNNFVIKRDFSNGNNMRAEIPPWLHSNDLRGEIFIGSCQDEHPHQNHETLNPNGHGHGHGCGASIGLPPPSSYQCSSVSSPHISATALLQKAAQMGATMSSTTTTSGSMQRPHKMVHVSTAAAVSASEPATFLHDMINSLSSASASHPFLQDSSFNDVTAFPAMHHHIVPATATTTVTAASGGRSDGLTRDFLGLRPLSHGDILSLTGFGNCIVPNSSNLQSQIQKPWQG 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6100750 6104001 + Cp4.1LG12g08970.1 Cpe12g00615 478612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00615 473 MobiDBLite consensus disorder prediction 48 69 - -
Cpe12g00615 473 SUPERFAMILY Formin homology 2 domain (FH2 domain) 54 170 - -
Cpe12g00615 473 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 452 - -
Cpe12g00615 473 Pfam Zinc finger, C2H2 type 94 116 IPR013087 -
Cpe12g00615 473 Gene3D Classic Zinc Finger 73 146 - -
Cpe12g00615 473 MobiDBLite consensus disorder prediction 25 47 - -
Cpe12g00615 473 MobiDBLite consensus disorder prediction 25 79 - -
Cpe12g00615 473 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Cpe12g00615 473 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 26 452 - -
Cpe12g00615 473 SUPERFAMILY beta-beta-alpha zinc fingers 93 191 IPR036236 -
Cpe12g00615 473 Gene3D Classic Zinc Finger 147 228 - -
Cpe12g00615 473 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 116 IPR013087 -
Cpe12g00615 473 SMART c2h2final6 136 166 IPR013087 -
Cpe12g00615 473 SMART c2h2final6 94 116 IPR013087 -
Cpe12g00615 473 SMART c2h2final6 171 191 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00615 Cpe-Chr12:6100750 Cpe10g00600 Cpe-Chr10:3504977 5.61E-114 dispersed
Cpe12g00615 Cpe-Chr12:6100750 Cpe17g00479 Cpe-Chr17:3563821 0 wgd
Cpe12g00615 Cpe-Chr12:6100750 Cpe02g01726 Cpe-Chr2:14127921 9.93E-138 wgd
Cpe12g00615 Cpe-Chr12:6100750 Cpe03g01066 Cpe-Chr3:8815274 6.40E-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50327 PF00096 zf-C2H2 0.0047 CL0361 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00615 K25870 - csv:101220200 587.8