Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00616 ATGAGCCCCATCACTCACCACAACCACCCCCACCACCACCATCACCACCACCACCAACTCTCCAAACCCGCCCCCACCACCGCCTCAACCCTCGCCTCCGCCACCACTCAAGCCTGCGCCGCCTGCAAGTACCAACGCCGTAAGTGCGCTCCCGATTGCATTCTCGCCCCCTATTTCCCTCACGATCGCCAACGCCAATTTCTCAACGCTCATAAACTCTTCGGCGTTAGCAACATCACCAAAATCATTAAAAACCTCGATCCATTCGAGAAGGAAGAGGCAATGCGCACCATTATTTTTCAATCCGATGTCCGATCCATGGATCCTGTTGGTGGCTGCTATCGCATCATTCGCGACCTCCAACTCCAGATCGAATACATCAAAACCGAGCTCGATTTCGTTCTCAGTCAATTGGCGCTTTGTAAGCAGCAGGCCGCCGCCGCTGCCGCCGTCGCCATTCTCGAGGCGGATCCGATGAGTGGATACGGCGGACTTGAGCATCAATTTGTGGAGGGATATGGAGGGGAAGGGTTCGTAGTCGGGGAAAATGATAATCGGGAGACTCTGGAAGATCAAGAAGTCGAGGTTTGGGGAATTCAAGATTCGTGTTCTTCCCTGCAATTGAAACCGGCCGGCTCTGTTCAAGATTTCCATGATATCAAGATCGATACGAACAATACGAATCACCATCATCACCATCAACAACAACAACAACATCTTCTCAGGTTTCAACAGGATCATCATGATCATCATGATCTGGTTCATCACAGTGAAGAAGCTATGCTGAAGATGGACAATGTGATGTTAAAAGAGTCTGACCCAATACAACAGGCTCAAGATCAAGAGCTTAAAGGTGCAGTTGACACTTTATTTACCTTCCCAACTTGCGATCCTTAG 897 50.06 MSPITHHNHPHHHHHHHHQLSKPAPTTASTLASATTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLDPFEKEEAMRTIIFQSDVRSMDPVGGCYRIIRDLQLQIEYIKTELDFVLSQLALCKQQAAAAAAVAILEADPMSGYGGLEHQFVEGYGGEGFVVGENDNRETLEDQEVEVWGIQDSCSSLQLKPAGSVQDFHDIKIDTNNTNHHHHHQQQQQHLLRFQQDHHDHHDLVHHSEEAMLKMDNVMLKESDPIQQAQDQELKGAVDTLFTFPTCDP 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6110906 6113743 + Cp4.1LG12g08930.1 Cpe12g00616 478613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00616 298 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 32 274 - -
Cpe12g00616 298 MobiDBLite consensus disorder prediction 1 28 - -
Cpe12g00616 298 ProSiteProfiles LOB domain profile. 37 138 IPR004883 -
Cpe12g00616 298 Pfam Lateral organ boundaries (LOB) domain 38 133 IPR004883 -
Cpe12g00616 298 PANTHER LOB DOMAIN-CONTAINING PROTEIN 22 32 274 - -
Cpe12g00616 298 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02376 Cpe-Chr1:19857279 Cpe12g00616 Cpe-Chr12:6110906 1.01E-33 dispersed
Cpe12g00616 Cpe-Chr12:6110906 Cpe13g00936 Cpe-Chr13:7900922 7.71E-33 dispersed
Cpe11g00075 Cpe-Chr11:401877 Cpe12g00616 Cpe-Chr12:6110906 2.53E-33 transposed
Cpe12g00616 Cpe-Chr12:6110906 Cpe17g00481 Cpe-Chr17:3574220 3.56E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50328 PF03195 LOB 4.70E-35 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00616 - - cmos:111456336 478.018