Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe12g00638 | ATGGGGAACTTCATCGAAACGAGAAACAAGAAACAAGAGACGATATTTCAAGGATTTGAGCTGAAAATGGATCATTTGAGCTGGGATGGATACGGATCAAGAGCTACAACGAACACGCCACCGCCGTCGTCGTCATCGTTTTGGAGCAATTTCCAACAAGGACATGAACAAAGATTCATGATGTCAAATAATTCAAATTCTCTCAACTTCTTCAACTCAGTTCAAGATCTCCCAACTAGCAACATGGATGTTGTTGGACTTGAAACACAGCTCCTCCCAAGCTTCAACGGCGATAAAACAGCGACGGCGACAGCGGCAACAGCAGCGACATGCTCTCTCGAGTCGTTGGACTGCTTACTTTCAGCTACAAACAGCAACACAGACACATCAATTGAAGATGATGGATCAGTATCAATGATGCTATCAGATTACACAAATTTATGGAACTTTGGAGGCAATGCTGCACCATCTTCAAAGAGAAGCCATGATCAAACTCATATCAAACCAACAGAGTACTCTGTTTTCTCAAACAACATCATAACTTTATCTGATTCAACTTCAAACAGTGAAGGTTTTAAGATCATAACAGATCAAAATCTGCCAAAACAAAAGAAACCCAGATCAGAAAAGCCACCAAATTCATCAAACATCAACTTTCAACAATCATGTTCATCAGGATCATCATGTATTGATCAAGAACCTGACCCAGAAGCCATAGCACAAATGAAGGAGATGATATACAGAGCAGCAGCTTTCAGGCCAGTGAATTTGGGGTTAGAAGCCATAGAAAAGCCCAAAAGGAAGAACGTGAGGATTTCAACAGACCCACAAACAGTAGCAGCAAGGCAAAGGAGAGAGAGAATCAGTGAAAGAATAAGAGTTTTACAAAGGATTGTTCCTGGTGGAAGCAAAATGGATACTGCATCAATGCTTGATGAAGCAGCAAATTATCTCAAGTTCTTGAAGTCTCAGATCAAAGCATTGGAAAATCTTGGGCAAAAGATTGAATCTTTGAATTGCCCATCAAATACCATAGCTTTCTCTTTTAACCCATCTTTTCCCATACAAACTTCTTCATCATCTTCCTCCCATAATAATTTCTCACTCCAAAATCCTTATGATCAACTGATGGTTCTGATAGGCAAAGATTTGGATTGCCTTCGACACTTCGCAATGAATAACAGGAACAGTGCCTCGACTGGTATCAAAATGAATCAGAATGATAATGATGAACTTGTTATGAACACGATTTTCATGACAATAGATGGAACTGCAAATACATTTGACATAATCGAATGGTTAGAAGATGTTATGATTTGCGAGCGAGTTGCGGCCGAGTGCGACCATATCCGATCCCCCAAGTTGCTTTATAACAAAATATCATAA | 1386 | 39.9 | MGNFIETRNKKQETIFQGFELKMDHLSWDGYGSRATTNTPPPSSSSFWSNFQQGHEQRFMMSNNSNSLNFFNSVQDLPTSNMDVVGLETQLLPSFNGDKTATATAATAATCSLESLDCLLSATNSNTDTSIEDDGSVSMMLSDYTNLWNFGGNAAPSSKRSHDQTHIKPTEYSVFSNNIITLSDSTSNSEGFKIITDQNLPKQKKPRSEKPPNSSNINFQQSCSSGSSCIDQEPDPEAIAQMKEMIYRAAAFRPVNLGLEAIEKPKRKNVRISTDPQTVAARQRRERISERIRVLQRIVPGGSKMDTASMLDEAANYLKFLKSQIKALENLGQKIESLNCPSNTIAFSFNPSFPIQTSSSSSSHNNFSLQNPYDQLMVLIGKDLDCLRHFAMNNRNSASTGIKMNQNDNDELVMNTIFMTIDGTANTFDIIEWLEDVMICERVAAECDHIRSPKLLYNKIS | 461 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 6249699 | 6268357 | + | Cp4.1LG12g08690.1 | Cpe12g00638 | 478635 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe12g00638 | 461 | PANTHER | TRANSCRIPTION FACTOR BHLH87 | 38 | 372 | - | - | |
Cpe12g00638 | 461 | Gene3D | - | 277 | 340 | IPR036638 | GO:0046983 | |
Cpe12g00638 | 461 | Pfam | Helix-loop-helix DNA-binding domain | 282 | 321 | IPR011598 | GO:0046983 | |
Cpe12g00638 | 461 | Coils | Coil | 311 | 338 | - | - | |
Cpe12g00638 | 461 | MobiDBLite | consensus disorder prediction | 196 | 233 | - | - | |
Cpe12g00638 | 461 | MobiDBLite | consensus disorder prediction | 210 | 231 | - | - | |
Cpe12g00638 | 461 | SMART | finulus | 278 | 327 | IPR011598 | GO:0046983 | |
Cpe12g00638 | 461 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 277 | 333 | IPR036638 | GO:0046983 | |
Cpe12g00638 | 461 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 272 | 321 | IPR011598 | GO:0046983 | |
Cpe12g00638 | 461 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 38 | 372 | IPR045843 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe12g00638 | Cpe-Chr12:6249699 | Cpe19g00534 | Cpe-Chr19:4530320 | 1.66E-38 | dispersed | |
Cpe12g00638 | Cpe-Chr12:6249699 | Cpe17g00518 | Cpe-Chr17:4328574 | 6.34E-158 | wgd | |
Cpe12g00638 | Cpe-Chr12:6249699 | Cpe02g01708 | Cpe-Chr2:14015822 | 3.21E-45 | wgd | |
Cpe12g00638 | Cpe-Chr12:6249699 | Cpe03g01084 | Cpe-Chr3:8961850 | 1.42E-47 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50329 | PF00010 | HLH | 1.10E-05 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe12g00638 | - | - | cmos:111455909 | 642.114 |