Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00638 ATGGGGAACTTCATCGAAACGAGAAACAAGAAACAAGAGACGATATTTCAAGGATTTGAGCTGAAAATGGATCATTTGAGCTGGGATGGATACGGATCAAGAGCTACAACGAACACGCCACCGCCGTCGTCGTCATCGTTTTGGAGCAATTTCCAACAAGGACATGAACAAAGATTCATGATGTCAAATAATTCAAATTCTCTCAACTTCTTCAACTCAGTTCAAGATCTCCCAACTAGCAACATGGATGTTGTTGGACTTGAAACACAGCTCCTCCCAAGCTTCAACGGCGATAAAACAGCGACGGCGACAGCGGCAACAGCAGCGACATGCTCTCTCGAGTCGTTGGACTGCTTACTTTCAGCTACAAACAGCAACACAGACACATCAATTGAAGATGATGGATCAGTATCAATGATGCTATCAGATTACACAAATTTATGGAACTTTGGAGGCAATGCTGCACCATCTTCAAAGAGAAGCCATGATCAAACTCATATCAAACCAACAGAGTACTCTGTTTTCTCAAACAACATCATAACTTTATCTGATTCAACTTCAAACAGTGAAGGTTTTAAGATCATAACAGATCAAAATCTGCCAAAACAAAAGAAACCCAGATCAGAAAAGCCACCAAATTCATCAAACATCAACTTTCAACAATCATGTTCATCAGGATCATCATGTATTGATCAAGAACCTGACCCAGAAGCCATAGCACAAATGAAGGAGATGATATACAGAGCAGCAGCTTTCAGGCCAGTGAATTTGGGGTTAGAAGCCATAGAAAAGCCCAAAAGGAAGAACGTGAGGATTTCAACAGACCCACAAACAGTAGCAGCAAGGCAAAGGAGAGAGAGAATCAGTGAAAGAATAAGAGTTTTACAAAGGATTGTTCCTGGTGGAAGCAAAATGGATACTGCATCAATGCTTGATGAAGCAGCAAATTATCTCAAGTTCTTGAAGTCTCAGATCAAAGCATTGGAAAATCTTGGGCAAAAGATTGAATCTTTGAATTGCCCATCAAATACCATAGCTTTCTCTTTTAACCCATCTTTTCCCATACAAACTTCTTCATCATCTTCCTCCCATAATAATTTCTCACTCCAAAATCCTTATGATCAACTGATGGTTCTGATAGGCAAAGATTTGGATTGCCTTCGACACTTCGCAATGAATAACAGGAACAGTGCCTCGACTGGTATCAAAATGAATCAGAATGATAATGATGAACTTGTTATGAACACGATTTTCATGACAATAGATGGAACTGCAAATACATTTGACATAATCGAATGGTTAGAAGATGTTATGATTTGCGAGCGAGTTGCGGCCGAGTGCGACCATATCCGATCCCCCAAGTTGCTTTATAACAAAATATCATAA 1386 39.9 MGNFIETRNKKQETIFQGFELKMDHLSWDGYGSRATTNTPPPSSSSFWSNFQQGHEQRFMMSNNSNSLNFFNSVQDLPTSNMDVVGLETQLLPSFNGDKTATATAATAATCSLESLDCLLSATNSNTDTSIEDDGSVSMMLSDYTNLWNFGGNAAPSSKRSHDQTHIKPTEYSVFSNNIITLSDSTSNSEGFKIITDQNLPKQKKPRSEKPPNSSNINFQQSCSSGSSCIDQEPDPEAIAQMKEMIYRAAAFRPVNLGLEAIEKPKRKNVRISTDPQTVAARQRRERISERIRVLQRIVPGGSKMDTASMLDEAANYLKFLKSQIKALENLGQKIESLNCPSNTIAFSFNPSFPIQTSSSSSSHNNFSLQNPYDQLMVLIGKDLDCLRHFAMNNRNSASTGIKMNQNDNDELVMNTIFMTIDGTANTFDIIEWLEDVMICERVAAECDHIRSPKLLYNKIS 461
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 6249699 6268357 + Cp4.1LG12g08690.1 Cpe12g00638 478635
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00638 461 PANTHER TRANSCRIPTION FACTOR BHLH87 38 372 - -
Cpe12g00638 461 Gene3D - 277 340 IPR036638 GO:0046983
Cpe12g00638 461 Pfam Helix-loop-helix DNA-binding domain 282 321 IPR011598 GO:0046983
Cpe12g00638 461 Coils Coil 311 338 - -
Cpe12g00638 461 MobiDBLite consensus disorder prediction 196 233 - -
Cpe12g00638 461 MobiDBLite consensus disorder prediction 210 231 - -
Cpe12g00638 461 SMART finulus 278 327 IPR011598 GO:0046983
Cpe12g00638 461 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 277 333 IPR036638 GO:0046983
Cpe12g00638 461 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 272 321 IPR011598 GO:0046983
Cpe12g00638 461 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 38 372 IPR045843 GO:0003700|GO:0006355
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00638 Cpe-Chr12:6249699 Cpe19g00534 Cpe-Chr19:4530320 1.66E-38 dispersed
Cpe12g00638 Cpe-Chr12:6249699 Cpe17g00518 Cpe-Chr17:4328574 6.34E-158 wgd
Cpe12g00638 Cpe-Chr12:6249699 Cpe02g01708 Cpe-Chr2:14015822 3.21E-45 wgd
Cpe12g00638 Cpe-Chr12:6249699 Cpe03g01084 Cpe-Chr3:8961850 1.42E-47 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50329 PF00010 HLH 1.10E-05 No_clan Cpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00638 - - cmos:111455909 642.114