Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00643 ATGTCGTGGCAAACGTATGTCGACGATCACCTTATGTGTGAGATTGAAGGCAACCATCTCACCTCTGCCGCTATCATCGGACACGACGGTAGTGTTTGGGCGCAGAGTGCCTCATTCCCTCAGTTTAAGCCGGAGGAGATTTCAGCAATTATGAAGGATTTTGATGAGCCTGGTTCTCTTGCCCCAACTGGTTTACACCTTGGTGGCACCAAGTACATGGTTATCCAGGGAGAGCCTGGAGCTGTTGTTCGTGGGAAAAAGGGCGCTGGCGGAGTTACTGTGAAGAAAACTGAGAAAGCCATGATTGTTGGAATCTATGATGAACCTGTAACTCCAGGACAATGCAATATGGTTGTTGAAAGGTTGGGAGATTACCTGATCGAACAGGGTTTGTAA 396 47.98 MSWQTYVDDHLMCEIEGNHLTSAAIIGHDGSVWAQSASFPQFKPEEISAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVVRGKKGAGGVTVKKTEKAMIVGIYDEPVTPGQCNMVVERLGDYLIEQGL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6305539 6307538 + Cp4.1LG12g08630.1 Cpe12g00643 478640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00643 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Cpe12g00643 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Cpe12g00643 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Cpe12g00643 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Cpe12g00643 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Cpe12g00643 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Cpe12g00643 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
Cpe12g00643 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Cpe12g00643 131 PANTHER PROFILIN 1 131 IPR005455 GO:0003779
Cpe12g00643 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Cpe12g00643 131 SMART prof_2 1 131 IPR005455 GO:0003779
Cpe12g00643 131 CDD PROF 2 130 IPR005455 GO:0003779
Cpe12g00643 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Cpe12g00643 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Cpe12g00643 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Cpe12g00643 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Cpe12g00643 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Cpe12g00643 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Cpe12g00643 131 PANTHER PROFILIN 1 131 - -
Cpe12g00643 131 Pfam Profilin 1 130 IPR005455 GO:0003779
Cpe12g00643 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g01699 Cpe12g00643 CCT
Cpe03g01090 Cpe12g00643 CCT
Cpe02g01699 Cpe12g00643 ECH
Cpe03g01090 Cpe12g00643 ECH
Cpe12g00643 Cpe17g00524 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g01144 Cpe-Chr11:9475430 Cpe12g00643 Cpe-Chr12:6305539 3.45E-70 dispersed
Cpe12g00643 Cpe-Chr12:6305539 Cpe17g00524 Cpe-Chr17:4370964 6.69E-93 wgd
Cpe12g00643 Cpe-Chr12:6305539 Cpe02g01699 Cpe-Chr2:13966508 2.44E-76 wgd
Cpe12g00643 Cpe-Chr12:6305539 Cpe03g01090 Cpe-Chr3:9000799 1.77E-77 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00643 K05759 - pop:7475105 246.514