Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00644 ATGGGGAAAGCTACCAGATGGTTGAAGGGTCTACTTGGGATCAAGAAAGAGAAGGACCCATCTGGGAATTTGAATTCAAATTCAACGGCGGTTGTTGGTGACAAAAAGGAGAAGAAACGGTGGAGTTTTGCGAAGTCCGGTAGAGATTCCGGCCAAATACAGCCTCCGGCTAGAAAGGCGCTTCGAGCTCTCAAAGGGCTCGTTAAATTGCAGGCCGTGGTTAGAGGATTTCTCGTAAGAAAACGAGCCGCTGCAACTCTTCACAGTATGCAAGTTCTTTTTAGAGCTCAAACTGCAATTAGGACACAAAGAGCTCGTCGATCTTTCAACAAAGAGAATCGCTTTATCCCCGAGATTCGACCCCGAAAATCTGCGGAACGGTTCGATGAAACAAGGAGTGAATTCCATAGCAAGAGATTATCAGAAACACCCTCCATGAATTCAATGGATGAGAGCCCAAAAATCGTGGAAATCGACACCTACCGAACTCGATCATCGAGGTCACGTAGATACATTTCCGCATTCTCCGAATGCGGAGGAGACGATGTAGCTATCTCATCTTCGCCATTGCCATGTTTGAATCGACCTCGAATCATCGATTGCCACAACAACATGGTTCAAGACTTCGAATGGTGCTTGATGGGCGAAGACTGCAAGTTCCCTACAGCGCACAGCACGCCGCGACTATCGAACAATTCATTCGCCTCGACCAACATGCCGGTTACGCCATCGAAGAGCGTGTGCGGAGACAGCTTCTTTAGGCCATACATGAACTACTACCCGAATTACATGGCGAACACGCAATCGTTCAAGGCGAAATTGAGGTCACAAAGTGCACCAAAGCAAAGGCCAGAGCCTGGGTCAAAGAAGAAGCTGTCATTGAATGAAGTAATGGCAGCAAGGAACAGCTTAAGCAGTGTAAGAATGCAGAGACCAAGCAACCAAATGGTGCAAATGGTTGAAGAAGAAGAAGAAGAAGAACAAATTATGGGGTTTGAGTGA 1002 47.01 MGKATRWLKGLLGIKKEKDPSGNLNSNSTAVVGDKKEKKRWSFAKSGRDSGQIQPPARKALRALKGLVKLQAVVRGFLVRKRAAATLHSMQVLFRAQTAIRTQRARRSFNKENRFIPEIRPRKSAERFDETRSEFHSKRLSETPSMNSMDESPKIVEIDTYRTRSSRSRRYISAFSECGGDDVAISSSPLPCLNRPRIIDCHNNMVQDFEWCLMGEDCKFPTAHSTPRLSNNSFASTNMPVTPSKSVCGDSFFRPYMNYYPNYMANTQSFKAKLRSQSAPKQRPEPGSKKKLSLNEVMAARNSLSSVRMQRPSNQMVQMVEEEEEEEQIMGFE 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6309281 6310863 - Cp4.1LG12g08620.1 Cpe12g00644 478641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00644 333 PANTHER IQ-DOMAIN 5-RELATED 57 317 - -
Cpe12g00644 333 PANTHER - 1 51 - -
Cpe12g00644 333 MobiDBLite consensus disorder prediction 319 333 - -
Cpe12g00644 333 PANTHER - 57 317 - -
Cpe12g00644 333 ProSiteProfiles Zinc finger C3H1-type profile. 195 227 IPR000571 GO:0046872
Cpe12g00644 333 MobiDBLite consensus disorder prediction 307 333 - -
Cpe12g00644 333 MobiDBLite consensus disorder prediction 16 38 - -
Cpe12g00644 333 Pfam Protein of unknown function (DUF4005) 226 310 IPR025064 -
Cpe12g00644 333 MobiDBLite consensus disorder prediction 272 293 - -
Cpe12g00644 333 ProSiteProfiles IQ motif profile. 65 91 IPR000048 GO:0005515
Cpe12g00644 333 Pfam IQ calmodulin-binding motif 68 82 IPR000048 GO:0005515
Cpe12g00644 333 MobiDBLite consensus disorder prediction 126 150 - -
Cpe12g00644 333 PANTHER IQ-DOMAIN 5-RELATED 1 51 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g01697 Cpe12g00644 CCT
Cpe03g01092 Cpe12g00644 CCT
Cpe03g01092 Cpe12g00644 ECH
Cpe02g01697 Cpe12g00644 ECH
Cpe12g00644 Cpe17g00525 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00644 Cpe-Chr12:6309281 Cpe03g01460 Cpe-Chr3:11630733 9.26E-28 dispersed
Cpe12g00644 Cpe-Chr12:6309281 Cpe17g00525 Cpe-Chr17:4376627 6.34E-30 wgd
Cpe12g00644 Cpe-Chr12:6309281 Cpe18g00396 Cpe-Chr18:5187816 4.78E-90 wgd
Cpe12g00644 Cpe-Chr12:6309281 Cpe02g01697 Cpe-Chr2:13961624 2.30E-59 wgd
Cpe12g00644 Cpe-Chr12:6309281 Cpe03g01092 Cpe-Chr3:9011328 3.22E-10 wgd
Cpe12g00644 Cpe-Chr12:6309281 Cpe04g01092 Cpe-Chr4:9504874 1.06E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00644 - - csv:101204536 420.624