Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00658 ATGGCTATGTCCTGCAAGGATGGTAACAAACATGGTATCGACAATGGCAAATATGTTCGGTACACACCGGAGCAGGTTGAAGCCCTTGAGCGGCTCTATCATGAATGTCCAAAACCCAGTTCCATTCGTCGTCAGCAGCTTATCAGGGAGTGTCCCATTCTCTCTAATATCGAGCCTAAGCAAATCAAAGTCTGGTTTCAAAATAGAAGATGTCGTGAAAAACAGAGGAAAGAGGCTTCTCGGCTACAAGCTGTGAACAGGAAGCTTACGGCCATGAATAAGCTTTTAATGGAGGAGAATGATAGGCTGCAGAAGCAGGTTTCGCAGCTGGTGTATGAAAATGGCTATTTCCGCCAGCATACTCAAACTACGACGCTTGGAGCTAAAGATACAAGTTGTGAACCGGTGGTAACAAGCGGTCAACACAATTTGGCATCTCAGCATCCGCCAAGGGATGCTAGCCCTGCAGGACTTTTGTCCATTGCAGAAGAGACTTTAACAGAGTTTCTTTCAAAGGCCACTGGAACTGCCGTGGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGNTTTGTTTCCGTATTTTTTTTCAGACTTTTGTCCATTGCAGAAGAGACTTTAACAGAGTTTCTTTCAAAGGCCACTGGAACTGCCGTGGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCCCTGGTGTGGCTGCACGTGCCTGCGGCCTGGTGGGTCTAGAACCTACTAGAGTTGCTGAAATCCTCAAGGATCAGCCATCGTGGTTTCGCGATTGCCGAGCTGTGGATGTCCTAAATGTGCTGCCAACAGCCAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTCTATGCGCCTACAACATTGGCGCCTGCTCGAGACTTCTGGTTGTTGCGCTACACTTCTGTTTTGGAAGATGGTAGCCTTGTGATCTGTGAGAGATCACTCAAGAACACTCAGAATGGTCCAACCATGCCTCCAGTGCAGCATTTTGTCAGAGCCGAGATGTTGCCGAGTGGATATCTGATAAGACCATGTGAAGGAGGTGGTTCGATCATTCATATCGTTGATCATATGGATCTGGAGCCATGGAGTGTTCCAGAAGTATTGCGTCCATTGTATGAATCAAGCACTGTTCTTGCTCAAAAGATGACGATGGCGGCTCTACGCCAGTTGAGGCAGATAGCTCATGAAGTTTCACAGTCAAATGGAACAGGCTGGAGTAGACGCCCTGCAGCCCTACGTTCACTTGGTCAAAGGCTCACCCGGGGGTTTAACGAAGCACTTAACGGGTTCAACGATGAAGGATGGTCCGTGATGGGAAATGATGGCATGGATGATGTAACTATTCTCGTAAATTCATCTCCTGACAAGCTAATGGGATTGAACATTTCATTCGCAAACGGATTTTCTGCCATCAGTAATGCAGTTTTATGTGCTAGAGCATCGATGCTATTGCAGAATGTGCCTCCTGCAATTCTACTGAGGTTTCTGCGGGAGCACCGGTCCGAATGGGCAGACAACAATATCGATGCTTATTCAGCTGCTGCTGTTAAGGTTGGTCCTTGGAGCTTACCAGGGTCCAGAGTTGGAAGTTTTGGGAATCAAGTAATACTTCCTCTGGCTCATACCATCGAGCACGAAGAGGGATTTGCTTGTCTTCAAGGAGGCATATGCCTATCGAGCATGGGCCGACCTGTTTCGTATGAACGAGCCGTAGCTTGGAAGGTGCTAAACGAAGAGGAAAATGCACACTGCATCTGCTTTATGTTTGTGAACTGGTCCTTTGTCTGA 1875 47.63 MAMSCKDGNKHGIDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQTTTLGAKDTSCEPVVTSGQHNLASQHPPRDASPAGLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGFVSVFFFRLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPTRVAEILKDQPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPTMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKMTMAALRQLRQIAHEVSQSNGTGWSRRPAALRSLGQRLTRGFNEALNGFNDEGWSVMGNDGMDDVTILVNSSPDKLMGLNISFANGFSAISNAVLCARASMLLQNVPPAILLRFLREHRSEWADNNIDAYSAAAVKVGPWSLPGSRVGSFGNQVILPLAHTIEHEEGFACLQGGICLSSMGRPVSYERAVAWKVLNEEENAHCICFMFVNWSFV 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6406594 6413998 - Cp4.1LG12g08510.1 Cpe12g00658 478655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00658 624 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
Cpe12g00658 624 Gene3D - 247 430 IPR023393 -
Cpe12g00658 624 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 576 624 IPR044830 GO:0003700
Cpe12g00658 624 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 210 576 IPR044830 GO:0003700
Cpe12g00658 624 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 205 IPR044830 GO:0003700
Cpe12g00658 624 Pfam Homeodomain 17 75 IPR001356 GO:0003677
Cpe12g00658 624 SUPERFAMILY Homeodomain-like 16 80 IPR009057 -
Cpe12g00658 624 PANTHER CLASS III HD-ZIP PROTEIN CNA1 576 624 - -
Cpe12g00658 624 PANTHER CLASS III HD-ZIP PROTEIN CNA1 210 576 - -
Cpe12g00658 624 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 205 - -
Cpe12g00658 624 Pfam MEKHLA domain 575 623 IPR013978 -
Cpe12g00658 624 SMART HOX_1 14 80 IPR001356 GO:0003677
Cpe12g00658 624 Pfam START domain 213 421 IPR002913 GO:0008289
Cpe12g00658 624 SUPERFAMILY Bet v1-like 212 423 - -
Cpe12g00658 624 CDD START_ArGLABRA2_like 209 423 - -
Cpe12g00658 624 CDD bZIP 69 108 - -
Cpe12g00658 624 SMART START_1 212 422 IPR002913 GO:0008289
Cpe12g00658 624 CDD homeodomain 17 77 IPR001356 GO:0003677
Cpe12g00658 624 Gene3D - 10 83 - -
Cpe12g00658 624 ProSiteProfiles START domain profile. 151 418 IPR002913 GO:0008289
Cpe12g00658 624 Coils Coil 72 113 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00658 Cpe-Chr12:6406594 Cpe17g00535 Cpe-Chr17:4476077 0 dispersed
Cpe12g00658 Cpe-Chr12:6406594 Cpe06g00487 Cpe-Chr6:2880183 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50331 PF01852 START 1.60E-54 CL0209 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00658 K09338 - csv:101213106 1004.97