Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00714 ATGAGAAAAGAAGAAAATCTCATCAGGGAAAATATTGGAGAATTTCCTGGTAGAATTACACGTGCTCGAGCTGCTGCATTTAGTACGTCAGGGCAGCTGCCTCCAAAAGTTCCTGCATATCAACAAGAGAGGCGGGCTGCACGAGCTAATTTGAAAAGAGCTGCTTCTGAAGAAAATAGCTGCCCTTCTATTGCTAAATCATCTCGGCCATGTAAGAGGAGGGCCGTGCTTCAGGATGTCAGCAATATTGGCTGTGAACCTTCGTACTCAAAATGTTCTAATGCAGCTAAAATTGAGACCAATTGTTGCAAGCCAACAATCAGAAACCGTATCAAGAAGTCAAAAGGAGCCTCATCAGTTGGTGTGGCTAACTCCAAGGTTCCTCTTGGTCTTAGAACCAAAGGAGCTTCATCAGTTGGTGTGGCGTACTCCAAGCCTCTTGATCTTAGAACACAAGGTGTACAAGCAAATGTGAGATCAAAAGCTAAGTTGAAAGTTGAGCATTCAAGTAATTCTGAAGACCATGAGGAACATCATCGGGTCGGTGGTATAAAGGAAGAGGTCACAAGTGATTTTCGGGATGATAATTGGAGGTCTCAAAGTCCTTCAGAGTCCCAAAATTTTCAAAATAAAGAGAAAGTGTCGTTTATGGGGACTAGAAGCAACCTGAACATTACAGACATTGATTGTAATGACAGAGATACTCAACTGTGCACTGTCTATGCCAATGATATCCATAACAATTTACGCGTTGCTGAGCTAACCAGAAGACCGCGTCCCAATTTCATGGAAACAGTGCAGACTGATATTACCCAAAGCATGCGGGGTATATTGGTTGATTGGCTCGTTGAGGTATCGGAGGAATACAAGTTAGTACCAGATACGCTCTATCTAACTGTATTTTTCATTGATTGGTATCTCTCCCAAAATTACATCGAGAGACAAAAGCTTCAACTGTTGGGTATCTCTTGCATGTTAATCGCCTCGAAGTATGAAGAAATTTGTGCCCCACGTGTTGAAGACTTTTGTTTCATCACTGACAGCACCTACACAAAAGAGGAGGTATTGAATATGGAAGGTCAAGTATTGAAGCATATGGGCTTTCAACTTTCTGCACCAACTGCAAAATCTTTCCTCAGGAGATACGTTCGAGCTGCACAAACGACATATAAGACCCCTAGTCTTGAACTCGAGTGCCTCGCCAACTATCTTGCCGAATTAACACTGGTTGACTACGGTTTCTTGAACTTTCTTCCCTCAGTTATAGCTGCATCAGCTGTATTTCTTTCGAAATGGACGTTGGATCAGTCGAGTCACCCATGGAATTCAACACTGGAATACTATACCTCATATAAAGCATCAGATCTGAAAAAAACTGTTCTTGCTTTACAAGATTTACAGTTGAACACCAATGGTTGTCCTCTTAGCTCGATTCGCGTCAAGTATCGACAAGAAAAGTTCAAAGGCGTTGCAACTTTGTCTTCCCCGAAATTACTCGATACACTATTCTGA 1512 42.13 MRKEENLIRENIGEFPGRITRARAAAFSTSGQLPPKVPAYQQERRAARANLKRAASEENSCPSIAKSSRPCKRRAVLQDVSNIGCEPSYSKCSNAAKIETNCCKPTIRNRIKKSKGASSVGVANSKVPLGLRTKGASSVGVAYSKPLDLRTQGVQANVRSKAKLKVEHSSNSEDHEEHHRVGGIKEEVTSDFRDDNWRSQSPSESQNFQNKEKVSFMGTRSNLNITDIDCNDRDTQLCTVYANDIHNNLRVAELTRRPRPNFMETVQTDITQSMRGILVDWLVEVSEEYKLVPDTLYLTVFFIDWYLSQNYIERQKLQLLGISCMLIASKYEEICAPRVEDFCFITDSTYTKEEVLNMEGQVLKHMGFQLSAPTAKSFLRRYVRAAQTTYKTPSLELECLANYLAELTLVDYGFLNFLPSVIAASAVFLSKWTLDQSSHPWNSTLEYYTSYKASDLKKTVLALQDLQLNTNGCPLSSIRVKYRQEKFKGVATLSSPKLLDTLF 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6723254 6729122 + Cp4.1LG12g07840.1 Cpe12g00714 478711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00714 503 SMART Cyclin_C_2 373 496 IPR004367 -
Cpe12g00714 503 Coils Coil 37 57 - -
Cpe12g00714 503 Pfam Cyclin, N-terminal domain 244 370 IPR006671 -
Cpe12g00714 503 Pfam Cyclin, C-terminal domain 373 495 IPR004367 -
Cpe12g00714 503 CDD CYCLIN 274 359 IPR013763 -
Cpe12g00714 503 MobiDBLite consensus disorder prediction 165 209 - -
Cpe12g00714 503 CDD CYCLIN 373 463 IPR013763 -
Cpe12g00714 503 SUPERFAMILY Cyclin-like 373 498 IPR036915 -
Cpe12g00714 503 SUPERFAMILY Cyclin-like 234 370 IPR036915 -
Cpe12g00714 503 PANTHER CYCLIN-A2-4 51 503 - -
Cpe12g00714 503 PANTHER CYCLINS 51 503 IPR039361 -
Cpe12g00714 503 PIRSF Cyclin_A_B_D_E 35 502 IPR039361 -
Cpe12g00714 503 Gene3D - 258 371 - -
Cpe12g00714 503 MobiDBLite consensus disorder prediction 165 198 - -
Cpe12g00714 503 SMART cyclin_7 280 364 IPR013763 -
Cpe12g00714 503 SMART cyclin_7 377 465 IPR013763 -
Cpe12g00714 503 Gene3D - 244 492 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe12g00714 Cpe17g00601 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02068 Cpe-Chr1:17525206 Cpe12g00714 Cpe-Chr12:6723254 1.95E-79 dispersed
Cpe02g00434 Cpe-Chr2:2437300 Cpe12g00714 Cpe-Chr12:6723254 9.66E-145 dispersed
Cpe04g00309 Cpe-Chr4:3874502 Cpe12g00714 Cpe-Chr12:6723254 1.51E-78 dispersed
Cpe06g00355 Cpe-Chr6:1977645 Cpe12g00714 Cpe-Chr12:6723254 8.09E-111 dispersed
Cpe12g00714 Cpe-Chr12:6723254 Cpe13g00635 Cpe-Chr13:6074518 3.49E-106 dispersed
Cpe15g00455 Cpe-Chr15:5624271 Cpe12g00714 Cpe-Chr12:6723254 5.94E-65 dispersed
Cpe12g00714 Cpe-Chr12:6723254 Cpe17g00601 Cpe-Chr17:4969863 0 wgd
Cpe12g00714 Cpe-Chr12:6723254 Cpe07g00263 Cpe-Chr7:1707425 3.05E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00714 K06627 - csv:101222299 893.649