Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00720 ATGGCGGTTTTTGCTCAATCCTCTAATGTTCTCACCTATCTTGACCGTTCCAATCCCCAAATCTCCAACAATTACAATCTCAAAGCCCTATCCTTCTCCAAAAACCTGCAAACCCACAAGCAAACGCTAAGAAAATCTCAAGAAATCTCAGTCCTAGGCGCCGCGGTCTCTAATTCCACCATCAATCAAACTCAGAACTTAGAATTACAACAACTATGCCTTCTGGGGAAGCTAGAACAAGCGATGAAACGTATGGAATCGATGCTAGAGCTCCGGATTGAGGTGGAAGAAGATGTTTACATTGCTTTGTTGAGGCTATGTGAGTGGAGAAGAGCGCCCGATGAAGGGTCTCGAGTCTACGGAGGTGTTTTGAGCTCCAAATCTCGCTTGGGCGTTCGGCTTGGCAATGCTTTATTGAGCATGTTCGTCAGGTTTGGCAATTTAACTGATGCCTGTTTAGCATCTGCTTGTGAGCTTCTTGGTAACCAGAGATTAGGGAGAGAAATCCATGGAGTTGTGGTTAAATCCGAGTTTGGGGATGATGTTTCGATGAGCAATTCTTTGATTCAGATGTATTCTAGTCTTGGCCATTTGGGGGAAGCAGAGAAAGTCTTTTCACGAATGGTGTCGAAAGATGTGGTATCGTGGACGGCGATGATAGCGAGTTATGACAGTCATAAGCTGCCTCTTAAGGCTGTTGAAACTTACAAAACGATGGCATTAGAGGGCGTAATGGCGGATGGGATTACTTTAGTTAGTGTATTATCTGCTTGTGCTTGTTTAGGCCATTTGGATTTAGGCATAAGGCTTCATGGGATTAGTATCAAGACTGGCTTCATATCACATGTCATGGTCTCAAATGCTCTCATTGATATGTACTCAAAGTGTAAATGCGTCAACAAGGCCTTAGAAGTATTCCACAAGATCTCGGGAAAGAACGTCATATCTTGGACTTCACTCATCCTTGGTCTACGAATTAACAATCGAAGTTTCGAGGCGCTTTTTTTCTTCCGTCAGATGAAGGAATCAATGAAACCAAACTCTCGCAACGACGACATCGGAACAGCAGACGATCACTTCCTGGTTGCTCGGACAGTGTATGAACAAAACGATCGAAAACGATACAAGAAAATGCTGGTGCGGCCATGGACGTCGTTGAGATCGGCTTTTGCCACAAGGGAGTACGCCATCGGCCGTTTACCAACTATGGAGGAGTCTGCTCCCGACCAATCTGCCACCGTAAACAGGTGGTTCCGCCGTCTTCCGGCGACCCTCAGCCCTAAAAATTCCGTCCTTGCAGAGATATCAGGTGCAGTTGGCGACCTCGGGACTTACATCCCCATCGTTCTCACTCTCACTCTGGTCTCCCATCTCGATCTCGGGACAACTCTTATCTTTACCGCTCTTTACAATATCGTTACCGGCCTTCTCTTCGGCATTCCGATGCCGGTTCAGCCGATGAAATCCATCGCCGCCGTCGCCGTCGCTGAGTCTACTCATCTCACTCTCCCTCAAATTGCCGCCGCGGGCCTTTCCACAGCTGCTGTCCTCCTAATACTCGGCGCCACTGGCCTTATGTCCGTTCTCTATCGATACCTCCCGCTGCCGGTCGTCCGCGGTATTCAGCTCTCTCAGGGCCTTTCCTTTGCCTTCACTGCTATTAGATACATTCGGTATGATCAAGATTTGGTCACCTCTAAATCCGGTGGATCTCGGTCCTGGCTTGGATTTGACGGCCTATTAGTTGCCCTAATTTCTTGTTTGTTTCTAATTTTGACCACCGGAGCTGGCGATTCTCACAATGAAGAACCGTCGTCTTCCGAATCGCATAATGCTTCTGAATCTCGTTCTGGCCGTCGCATTAGAAGGTTACGAATGTTATCTATGATTCCTGCTGCTCTGATTGTGTTCTTGTTTGGATTATTGATCTGTTTCCTTCGCGATCTTTCCGTTTTGAAATACCTAAAATTCGGCCCATCGAAATTGCATCTTCTGAGCATCACATGGGAAGATTGGAAAATAGGGTTTGTAAGAGCTGCAATTCCCCAAATTCCTCTTTCGATTTTGAACTCTGTAATTGCAGTTTGCAAATTGTCAGGGGATTTGTTTCCAGATCGTGAAGCTTCCGCCATGAGTGTGTCCATAAGTGTTGGGATAATGAACTTCGTCGGATGCTGGTTCGGCGCAATGCCGGTTTGTCACGGCGCCGGTGGCCTCGCCGGGCAGTATCGGTTCGGCGGCAGAAGTGGCGCATCGGTGGTGTTTTTAGGGATTGGGAAACTGGTTTTGGGATTGGCGTTTGGGAATTCGTTTGCACAGGTTTTGAATGAGTTCCCAATTGGGGTTCTTGGGGTGCTTCTTCTATTTGCAGGGATTGAATTGGCTATGGCTTCCAGGGACATGAACAGTAAAGAAGAATCATTTGTTATGTTGGTTTGTGCTGCTGTATCTCTCACAGGGTCCAGTGCTGCGTTGGGTTTTGGCGTTGGGATTGTGCTGTTTCTGCTTCTGAAACTGAGAGAATTCGACTGTTCTTCCTGTTCTTGCTTTGGGTTTCACAAGATGAAGCCCAAATCTGATGCTGAAGAAGAAGAACAACAACAAGGAACCCTGTTGTTAGCTTGA 2625 47.01 MAVFAQSSNVLTYLDRSNPQISNNYNLKALSFSKNLQTHKQTLRKSQEISVLGAAVSNSTINQTQNLELQQLCLLGKLEQAMKRMESMLELRIEVEEDVYIALLRLCEWRRAPDEGSRVYGGVLSSKSRLGVRLGNALLSMFVRFGNLTDACLASACELLGNQRLGREIHGVVVKSEFGDDVSMSNSLIQMYSSLGHLGEAEKVFSRMVSKDVVSWTAMIASYDSHKLPLKAVETYKTMALEGVMADGITLVSVLSACACLGHLDLGIRLHGISIKTGFISHVMVSNALIDMYSKCKCVNKALEVFHKISGKNVISWTSLILGLRINNRSFEALFFFRQMKESMKPNSRNDDIGTADDHFLVARTVYEQNDRKRYKKMLVRPWTSLRSAFATREYAIGRLPTMEESAPDQSATVNRWFRRLPATLSPKNSVLAEISGAVGDLGTYIPIVLTLTLVSHLDLGTTLIFTALYNIVTGLLFGIPMPVQPMKSIAAVAVAESTHLTLPQIAAAGLSTAAVLLILGATGLMSVLYRYLPLPVVRGIQLSQGLSFAFTAIRYIRYDQDLVTSKSGGSRSWLGFDGLLVALISCLFLILTTGAGDSHNEEPSSSESHNASESRSGRRIRRLRMLSMIPAALIVFLFGLLICFLRDLSVLKYLKFGPSKLHLLSITWEDWKIGFVRAAIPQIPLSILNSVIAVCKLSGDLFPDREASAMSVSISVGIMNFVGCWFGAMPVCHGAGGLAGQYRFGGRSGASVVFLGIGKLVLGLAFGNSFAQVLNEFPIGVLGVLLLFAGIELAMASRDMNSKEESFVMLVCAAVSLTGSSAALGFGVGIVLFLLLKLREFDCSSCSCFGFHKMKPKSDAEEEEQQQGTLLLA 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6766185 6771502 - Cp4.1LG12g07760.1 Cpe12g00720 478717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00720 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Cpe12g00720 874 TIGRFAM PPR: pentatricopeptide repeat domain 186 214 IPR002885 -
Cpe12g00720 874 PANTHER MOLYBDATE TRANSPORTER 2 413 865 - -
Cpe12g00720 874 Coils Coil 78 98 - -
Cpe12g00720 874 Pfam PPR repeat 185 212 IPR002885 -
Cpe12g00720 874 Pfam PPR repeat 214 244 IPR002885 -
Cpe12g00720 874 Pfam PPR repeat 315 343 IPR002885 -
Cpe12g00720 874 Pfam PPR repeat 287 313 IPR002885 -
Cpe12g00720 874 PANTHER - 413 865 IPR031563 GO:0015098|GO:0015689
Cpe12g00720 874 Gene3D Tetratricopeptide repeat domain 152 263 IPR011990 GO:0005515
Cpe12g00720 874 Gene3D Tetratricopeptide repeat domain 264 350 IPR011990 GO:0005515
Cpe12g00720 874 Pfam Molybdate transporter of MFS superfamily 433 549 IPR031563 GO:0015098|GO:0015689
Cpe12g00720 874 Pfam Molybdate transporter of MFS superfamily 676 794 IPR031563 GO:0015098|GO:0015689
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00720 Cpe-Chr12:6766185 Cpe08g01246 Cpe-Chr8:9019319 6.66E-10 dispersed
Cpe07g00259 Cpe-Chr7:1680996 Cpe12g00720 Cpe-Chr12:6766185 1.08E-151 transposed
Cpe12g00720 Cpe-Chr12:6766185 Cpe17g00596 Cpe-Chr17:4923562 1.30E-92 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00720 - - cmo:103499762 783.482