Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00736 ATGGGGTCTTTCGACATGGCGCGCGCGATGTGGCGAGGAGGAAGTTCAGAGGATCAATTGGCGGTCATGTTTGGCGACACATTTCTTCAGGCGATGCTCGTTCAAGCGTTTCGGCGGTCGATTGTTATAGTTGGTGAAGGTCCTTTAGCAGCTAACGACGGTGGGTGGATGAGACGGTCGATTAAGAACTGTTTGTTTCCTGGTTTAAGCAATCAAAGAGACTCCATGTTAGGTGATGACCAGAAACTTGGTTGTTCTTCCCAAGAACAGCCACTCTGTTCTGGGAATTTGATGATGTTCATGAAGAATCAGGACCCTTCTTGCAGAGATTATTCAGAGGTTTTTTCTGGGGTTTCTTCAAACTATGTTGAATCTGTGGGAGATAGAAGTAATGGTGAAATGATTTTCATTCCACCAGTAGTAGGAATTTTAGATGATCCAAGTTTTCAATGTCAGGGTGTTTCACTTAGCCTTTCCACACACTCACCCTCTGTTGTTTCTATGTCTTCATTTCCTCACCAATATCAGAACCCTGCTATGGCTTCTTCATTCATCAATGCATCTTCTTCGATCTTCGAGAAGAGGCCGAATCCGAAACCTTATAATGGTATGCATATAGTGGCGGGATCTGGGAATTCGACGTTGAATTTGGTATACGTCGAAGCTGCTCAGCAGGTGCTCGACGAAATGGTTAGCATCCGGGAAGCTTTGAAAGAGCTGAAGTCTAGGAAACTCAAAGGTTCCAGTGGTTTGGGTGTTGATTTCTGTAGAGAAAATGATGGGGGATGTAATGATATGAATGGGGAGATATGTTCTGGTTCGAGGGAATCGTTGATCGCAAATTCGTCGGGTGATTTATCGCCTACCGAACGACAGGATTTGAAGAACAAAAACTCAAAGCTTTTGTCCTTGTTGGGTGAGGTGGATCGAAGGTACAAGCAATATTACGAACATCTGCAATTGTTGTCGTCGTCTTTCGACACTGTAGCAGGCCGGGGGGCTGCAGAGTTCTACACTGCGCTTGCACACCAGACTATTTCGTGTCACTTTCGACGCTTGCAAGATGCAATCAATGCACAGATTGAGGTTACCAGGAGAACATTGGGGGAGCAAGATGCTTCCCATTTTGTTCAAGAAGGCATTCCCCGTCTCCGCTTTGTCGACCAGCACCTCAGGCAACAGAGGGCACTTCAACAGCTCGGTGTCACGCCACATAGTTGGAGACCTCAACGAGGGCTTCCCGAAAGCTCCGTGTCGATTCTTCGCGCTTGGCTGTTCGAACACTTCCTCCATCCATATCCCAAGGATTCAGAGAAGCTTAAGCTATCAAGACAAACTGGCCTGACCAGAAACCAAGTTGCAAACTGGTTTATAAACGCGCGTGTTCGGCTATGGAAACCAATGGTCGAGGAGATGTACAAAGAAGAATTCGGAGACTCAAACATGGACATCAAATCCTCACCAGAAAATGCATCCAAAGCCTCATGGAACAATTCACTATTCTCCGAAGATAGAGGAGGGGACGAGTTACACGAGTTGCACGAGCAAGTCCTCTACCGCTCGTGTTCTACCAACGACATGATCAAGTCGACTAACTTCTCAATCGGAGGAGACGTTTCACTTGCGCTGGAGTTGAAGCATTGTGAAGGTGATGAATTTGGGATGTTTGGGAGTAGTACCAACAGAATGGTTGGTTCAGTGGAGCTTGAGTCACAAGATTTGCCATGTTTGGAACCAGAAAGGCATCATCAATGCAGGCTCACCAGTTCAACTATGTTGCATGATTTTGTAGTTTGA 1797 46.24 MGSFDMARAMWRGGSSEDQLAVMFGDTFLQAMLVQAFRRSIVIVGEGPLAANDGGWMRRSIKNCLFPGLSNQRDSMLGDDQKLGCSSQEQPLCSGNLMMFMKNQDPSCRDYSEVFSGVSSNYVESVGDRSNGEMIFIPPVVGILDDPSFQCQGVSLSLSTHSPSVVSMSSFPHQYQNPAMASSFINASSSIFEKRPNPKPYNGMHIVAGSGNSTLNLVYVEAAQQVLDEMVSIREALKELKSRKLKGSSGLGVDFCRENDGGCNDMNGEICSGSRESLIANSSGDLSPTERQDLKNKNSKLLSLLGEVDRRYKQYYEHLQLLSSSFDTVAGRGAAEFYTALAHQTISCHFRRLQDAINAQIEVTRRTLGEQDASHFVQEGIPRLRFVDQHLRQQRALQQLGVTPHSWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKLKLSRQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSNMDIKSSPENASKASWNNSLFSEDRGGDELHELHEQVLYRSCSTNDMIKSTNFSIGGDVSLALELKHCEGDEFGMFGSSTNRMVGSVELESQDLPCLEPERHHQCRLTSSTMLHDFVV 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6825921 6828952 + Cp4.1LG12g07660.1 Cpe12g00736 478733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00736 598 Pfam Associated with HOX 219 357 IPR006563 -
Cpe12g00736 598 Pfam Homeobox KN domain 424 463 IPR008422 GO:0003677|GO:0006355
Cpe12g00736 598 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 93 508 - -
Cpe12g00736 598 SMART HOX_1 407 471 IPR001356 GO:0003677
Cpe12g00736 598 Gene3D - 404 481 - -
Cpe12g00736 598 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 93 508 - -
Cpe12g00736 598 CDD homeodomain 407 468 IPR001356 GO:0003677
Cpe12g00736 598 SUPERFAMILY Homeodomain-like 408 475 IPR009057 -
Cpe12g00736 598 SMART prehox3 208 359 IPR006563 -
Cpe12g00736 598 ProSiteProfiles 'Homeobox' domain profile. 404 467 IPR001356 GO:0003677
Cpe12g00736 598 Coils Coil 223 243 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01281 Cpe-Chr5:8935118 Cpe12g00736 Cpe-Chr12:6825921 5.10E-101 dispersed
Cpe12g00736 Cpe-Chr12:6825921 Cpe16g00265 Cpe-Chr16:4649470 2.05E-103 dispersed
Cpe12g00736 Cpe-Chr12:6825921 Cpe17g00578 Cpe-Chr17:4719166 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50336 PF07526 POX 7.60E-34 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00736 - - cpep:111807101 1156.35