Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00767 ATGGCCCGACCTCAACAGCGCTATCGTGGTGTCCGACAACGACATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTATTGAAGACAAGAATATGGTTGGGGACGTTCGAGACAGCCGAGGACGCAGCCCGAGCTTACGACGAGGCAGCACGGCTGATGTGCGGTCCAAAGGCACGAACCAACTTCCAATTCAATCCAAACGATCAACAATCGTCATCGTCATCGTCGTCTTCCTCCAAGCTTCTCTCCGCCGCGCTAATGGCGAAATTACACAAATGTCATTTAGCCTCACTACAAATCGCCAAAAAACACGCCGCCCATAAACAACACCCCGGATTCGAGCCCAACTACACCGTATACGGTGTCCCTCCCCCGAGCATTTCCCAAACCACCACCGACCGGTGGCGACAGGAAGAAACCCAAATAGAGACCAACAACGACAACAACAACATTCATCATCAACAATGCCTTCAACCACTTGAGGATGATGACATTGAACAAATGATACAAGAGCTATTAGACCTCGGATCATTCGAAATTATTACATGA 552 50.18 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQFNPNDQQSSSSSSSSSKLLSAALMAKLHKCHLASLQIAKKHAAHKQHPGFEPNYTVYGVPPPSISQTTTDRWRQEETQIETNNDNNNIHHQQCLQPLEDDDIEQMIQELLDLGSFEIIT 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6986397 6987040 - Cp4.1LG12g07360.1 Cpe12g00767 478764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00767 183 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Cpe12g00767 183 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 182 - -
Cpe12g00767 183 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Cpe12g00767 183 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Cpe12g00767 183 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Cpe12g00767 183 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Cpe12g00767 183 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Cpe12g00767 183 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Cpe12g00767 183 PANTHER ETHYLENE RESPONSE FACTOR 1 182 - -
Cpe12g00767 183 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00474 Cpe-Chr2:2695544 Cpe12g00767 Cpe-Chr12:6986397 1.03E-38 dispersed
Cpe11g01069 Cpe-Chr11:8969543 Cpe12g00767 Cpe-Chr12:6986397 6.01E-32 dispersed
Cpe12g00767 Cpe-Chr12:6986397 Cpe12g00557 Cpe-Chr12:5679142 2.52E-20 dispersed
Cpe12g00763 Cpe-Chr12:6965247 Cpe12g00767 Cpe-Chr12:6986397 4.34E-20 proximal
Cpe11g00306 Cpe-Chr11:1659772 Cpe12g00767 Cpe-Chr12:6986397 3.49E-61 wgd
Cpe12g00767 Cpe-Chr12:6986397 Cpe17g00629 Cpe-Chr17:5152578 3.39E-36 wgd
Cpe12g00767 Cpe-Chr12:6986397 Cpe02g01626 Cpe-Chr2:13608456 1.33E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50339 PF00847 AP2 7.50E-12 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00767 - - csv:105436189 277.715