Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00778 ATGACTTGGAAAATGGGGATATATCTCAGCTCCCCCAAAACAGAAAAGGCCTCAGACGATGGTGAGAATGAAAGTCTTCGGTATGGGGTATCCTCTATGCAAGGGTGGCGTGCAACCATGGAAGATGCTCATGCAGCCTGTCTAGATTTGGACACATCAACATCTTTCTTTGGTGTTTACGATGGCCATGGAGGCAAAGCAGTTTCAAAGTTCTGTGCCAAGTATCTCCATCAACAGGTGCTCAAGCACGAATCATACATTGCTGGGGATTTAGGAACTTCAGTACAGAAGGCCTTTCTTAGAATGGATGAGATGATGTGTGGACAAAGAGGATGGAGAGAATTAGCTATTTTAGGAGACAAAATGGACAAGATTTCTGGTATGATAGAAGGATTTATATGGTCGCCCAAGAGTGGTGAAGCTAACAATCAAGTGGATGATTGGCCTCCGGAGGAGGGACCTCACTCTGACTTTCATGGACCAAATGCTGGAAGCACAGCTTGTGTTGCAATCATACGAAATAACCAACTTGTGGTGGCCAATGCTGGGGATTCTCGCTGTGTCATTTCCAGAAAGGGCCAGAATGAAACTATGCCTGCAGAAAAGCAGATTGTAACTGCCAATCCAGATGTAACAACTGTTGAGCTTTGTGAGGATGACGAATTTCTTGTCATTGCCTGCGATGGCATCTGGGATTGTATGTCCAGCCAACAACTGGTTGATTACATTGGAGATCAACTTAAAACGGAAAGTAAACTCTCAGTCATTTGTGAGAGAGTATTTGACAGATGCTTGGCACCCTCAGTTGGTGGTGAAGGATGTGACAACATGACTATGATCTTGGTTCAATTTAAGAAGCCCATCCACAACCCAAATGCCGCTTCTACTTCTGCTGCGGAGCTGCCTTCAACGTCCAATCAACCGGTGTCTAATCCGAACGAAGGCCCTTCTAAAACTGAATAG 963 45.07 MTWKMGIYLSSPKTEKASDDGENESLRYGVSSMQGWRATMEDAHAACLDLDTSTSFFGVYDGHGGKAVSKFCAKYLHQQVLKHESYIAGDLGTSVQKAFLRMDEMMCGQRGWRELAILGDKMDKISGMIEGFIWSPKSGEANNQVDDWPPEEGPHSDFHGPNAGSTACVAIIRNNQLVVANAGDSRCVISRKGQNETMPAEKQIVTANPDVTTVELCEDDEFLVIACDGIWDCMSSQQLVDYIGDQLKTESKLSVICERVFDRCLAPSVGGEGCDNMTMILVQFKKPIHNPNAASTSAAELPSTSNQPVSNPNEGPSKTE 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7048385 7054045 - Cp4.1LG12g07230.1 Cpe12g00778 478775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00778 320 Gene3D - 4 195 IPR036457 -
Cpe12g00778 320 SMART PP2C_SIG_2 32 284 IPR001932 -
Cpe12g00778 320 CDD PP2Cc 27 284 IPR001932 -
Cpe12g00778 320 PANTHER PROTEIN PHOSPHATASE 2C 194 297 IPR015655 GO:0004722|GO:0006470
Cpe12g00778 320 SMART PP2C_4 17 282 IPR001932 -
Cpe12g00778 320 MobiDBLite consensus disorder prediction 293 320 - -
Cpe12g00778 320 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 3 192 - -
Cpe12g00778 320 SUPERFAMILY PP2C-like 7 285 IPR036457 -
Cpe12g00778 320 Pfam Protein phosphatase 2C 161 196 IPR001932 -
Cpe12g00778 320 Pfam Protein phosphatase 2C 27 106 IPR001932 -
Cpe12g00778 320 Pfam Protein phosphatase 2C 201 268 IPR001932 -
Cpe12g00778 320 ProSitePatterns PPM-type phosphatase domain signature. 56 64 IPR000222 GO:0043169
Cpe12g00778 320 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 194 297 - -
Cpe12g00778 320 PANTHER PROTEIN PHOSPHATASE 2C 3 192 IPR015655 GO:0004722|GO:0006470
Cpe12g00778 320 ProSiteProfiles PPM-type phosphatase domain profile. 27 284 IPR001932 -
Cpe12g00778 320 Gene3D - 196 285 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00778 Cpe-Chr12:7048385 Cpe09g00038 Cpe-Chr9:231284 7.98E-22 dispersed
Cpe12g00778 Cpe-Chr12:7048385 Cpe17g00635 Cpe-Chr17:5186043 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00778 K17499 - csv:101214132 571.237