Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00785 ATGGCCAAGATCTCACATCCGCCGCACAAGAATTCCATTTCTACCACCGCTAATTCTCAGTCTTCTACAGTCCATCACAGCCAGAAGAAGGTACTCAAGCGTACGCGTAAGTCCACTCCTCGAGATGCTCCCGCTCAGCGTAGCTCTGTTTACCGCGGAGTCACCAGGTTAGCCATTATCGGTGCGTATGATGATGAAGAAGCAGCGGCTCATGCTTACGACCTTGCTGCGCTCAAGTACTGGGGAACTGAAATTGTTCTCAACTTTCCACTATTAACATACCAAGACGAGCTTAAAGAAATGGAAGGTCAATCAAGAGAGGAGTATATTGGATATTTGAGAAGGAAGAGTAGCGGCTTTTCTCGCGGGGTTTCGAAGTACAGAGGTGTAGCAAGGCACCATCATAATGGAAGATGGGAAGCTCGAATCGGCAGAGTGTTTGGCAACAAATACCTTTACCTTGGAACATACGCTACCCAAGAGGAAGCTGCCACAGCTTACGACATGGCTGCCATAGAATACCGTGGCCTTAACGCCGTTACAAATTTCGACCTCAGCCGTTACATCAAATGCCTCCGTCCGGAGGAACAAGATATCCCAAACAATAATAACCGTCCACCAAGCCCTAACGCCGGCAAAACGACTTCAGAATTGGACCCCAAATCCCTCCTTGAATTCACCTTTCCGTCCCAATGTTCGAGCTCCGACCAACCCATCTCCACGCCACCACTGGGACCTGGCGGCGGTGACTCCTCCTCGTCGAAGGCGCTGGAGCTTCTACTCCATTCCTCAAAATTTAAAGATATAGTAGAAAGAAAACCCACCGCCGACCCTCCACAGACGCCGCCGGAATCTGACCGGCCTCGCCGCTGTATTCCCGACGACATTCAAACTTACTTCGATTGTACTCAAGATTCCGACGACATTGCCGAAGGCGACGACGGCATTTTTGGGTATCTAAATTCGTTTTTACCTTCATCAATTTTTCACTACGCACTCGATGCTTAA 1008 49.4 MAKISHPPHKNSISTTANSQSSTVHHSQKKVLKRTRKSTPRDAPAQRSSVYRGVTRLAIIGAYDDEEAAAHAYDLAALKYWGTEIVLNFPLLTYQDELKEMEGQSREEYIGYLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKCLRPEEQDIPNNNNRPPSPNAGKTTSELDPKSLLEFTFPSQCSSSDQPISTPPLGPGGGDSSSSKALELLLHSSKFKDIVERKPTADPPQTPPESDRPRRCIPDDIQTYFDCTQDSDDIAEGDDGIFGYLNSFLPSSIFHYALDA 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7092240 7096893 - Cp4.1LG12g07240.1 Cpe12g00785 478782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00785 335 MobiDBLite consensus disorder prediction 230 254 - -
Cpe12g00785 335 MobiDBLite consensus disorder prediction 268 291 - -
Cpe12g00785 335 MobiDBLite consensus disorder prediction 1 48 - -
Cpe12g00785 335 SUPERFAMILY DNA-binding domain 125 186 IPR016177 GO:0003677
Cpe12g00785 335 Gene3D AP2/ERF domain 125 186 IPR036955 GO:0003700|GO:0006355
Cpe12g00785 335 Gene3D AP2/ERF domain 49 92 IPR036955 GO:0003700|GO:0006355
Cpe12g00785 335 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1 57 - -
Cpe12g00785 335 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 60 319 - -
Cpe12g00785 335 SMART rav1_2 50 96 IPR001471 GO:0003700|GO:0006355
Cpe12g00785 335 SMART rav1_2 126 190 IPR001471 GO:0003700|GO:0006355
Cpe12g00785 335 ProSiteProfiles AP2/ERF domain profile. 27 90 IPR001471 GO:0003700|GO:0006355
Cpe12g00785 335 MobiDBLite consensus disorder prediction 197 217 - -
Cpe12g00785 335 ProSiteProfiles AP2/ERF domain profile. 126 184 IPR001471 GO:0003700|GO:0006355
Cpe12g00785 335 CDD AP2 125 186 IPR001471 GO:0003700|GO:0006355
Cpe12g00785 335 SUPERFAMILY DNA-binding domain 58 91 IPR016177 GO:0003677
Cpe12g00785 335 MobiDBLite consensus disorder prediction 8 26 - -
Cpe12g00785 335 MobiDBLite consensus disorder prediction 196 217 - -
Cpe12g00785 335 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 57 - -
Cpe12g00785 335 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 60 319 - -
Cpe12g00785 335 Pfam AP2 domain 125 176 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00785 Cpe-Chr12:7092240 Cpe01g01302 Cpe-Chr1:7828280 3.57E-65 dispersed
Cpe18g00584 Cpe-Chr18:6264092 Cpe12g00785 Cpe-Chr12:7092240 9.45E-108 transposed
Cpe12g00785 Cpe-Chr12:7092240 Cpe17g00642 Cpe-Chr17:5221863 3.89E-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50341 PF00847 AP2 6.70E-12 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00785 K09285 - csv:101206499 501.901