Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe12g00785 | ATGGCCAAGATCTCACATCCGCCGCACAAGAATTCCATTTCTACCACCGCTAATTCTCAGTCTTCTACAGTCCATCACAGCCAGAAGAAGGTACTCAAGCGTACGCGTAAGTCCACTCCTCGAGATGCTCCCGCTCAGCGTAGCTCTGTTTACCGCGGAGTCACCAGGTTAGCCATTATCGGTGCGTATGATGATGAAGAAGCAGCGGCTCATGCTTACGACCTTGCTGCGCTCAAGTACTGGGGAACTGAAATTGTTCTCAACTTTCCACTATTAACATACCAAGACGAGCTTAAAGAAATGGAAGGTCAATCAAGAGAGGAGTATATTGGATATTTGAGAAGGAAGAGTAGCGGCTTTTCTCGCGGGGTTTCGAAGTACAGAGGTGTAGCAAGGCACCATCATAATGGAAGATGGGAAGCTCGAATCGGCAGAGTGTTTGGCAACAAATACCTTTACCTTGGAACATACGCTACCCAAGAGGAAGCTGCCACAGCTTACGACATGGCTGCCATAGAATACCGTGGCCTTAACGCCGTTACAAATTTCGACCTCAGCCGTTACATCAAATGCCTCCGTCCGGAGGAACAAGATATCCCAAACAATAATAACCGTCCACCAAGCCCTAACGCCGGCAAAACGACTTCAGAATTGGACCCCAAATCCCTCCTTGAATTCACCTTTCCGTCCCAATGTTCGAGCTCCGACCAACCCATCTCCACGCCACCACTGGGACCTGGCGGCGGTGACTCCTCCTCGTCGAAGGCGCTGGAGCTTCTACTCCATTCCTCAAAATTTAAAGATATAGTAGAAAGAAAACCCACCGCCGACCCTCCACAGACGCCGCCGGAATCTGACCGGCCTCGCCGCTGTATTCCCGACGACATTCAAACTTACTTCGATTGTACTCAAGATTCCGACGACATTGCCGAAGGCGACGACGGCATTTTTGGGTATCTAAATTCGTTTTTACCTTCATCAATTTTTCACTACGCACTCGATGCTTAA | 1008 | 49.4 | MAKISHPPHKNSISTTANSQSSTVHHSQKKVLKRTRKSTPRDAPAQRSSVYRGVTRLAIIGAYDDEEAAAHAYDLAALKYWGTEIVLNFPLLTYQDELKEMEGQSREEYIGYLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKCLRPEEQDIPNNNNRPPSPNAGKTTSELDPKSLLEFTFPSQCSSSDQPISTPPLGPGGGDSSSSKALELLLHSSKFKDIVERKPTADPPQTPPESDRPRRCIPDDIQTYFDCTQDSDDIAEGDDGIFGYLNSFLPSSIFHYALDA | 335 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 7092240 | 7096893 | - | Cp4.1LG12g07240.1 | Cpe12g00785 | 478782 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe12g00785 | 335 | MobiDBLite | consensus disorder prediction | 230 | 254 | - | - | |
Cpe12g00785 | 335 | MobiDBLite | consensus disorder prediction | 268 | 291 | - | - | |
Cpe12g00785 | 335 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Cpe12g00785 | 335 | SUPERFAMILY | DNA-binding domain | 125 | 186 | IPR016177 | GO:0003677 | |
Cpe12g00785 | 335 | Gene3D | AP2/ERF domain | 125 | 186 | IPR036955 | GO:0003700|GO:0006355 | |
Cpe12g00785 | 335 | Gene3D | AP2/ERF domain | 49 | 92 | IPR036955 | GO:0003700|GO:0006355 | |
Cpe12g00785 | 335 | PANTHER | AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR | 1 | 57 | - | - | |
Cpe12g00785 | 335 | PANTHER | AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR | 60 | 319 | - | - | |
Cpe12g00785 | 335 | SMART | rav1_2 | 50 | 96 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe12g00785 | 335 | SMART | rav1_2 | 126 | 190 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe12g00785 | 335 | ProSiteProfiles | AP2/ERF domain profile. | 27 | 90 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe12g00785 | 335 | MobiDBLite | consensus disorder prediction | 197 | 217 | - | - | |
Cpe12g00785 | 335 | ProSiteProfiles | AP2/ERF domain profile. | 126 | 184 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe12g00785 | 335 | CDD | AP2 | 125 | 186 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe12g00785 | 335 | SUPERFAMILY | DNA-binding domain | 58 | 91 | IPR016177 | GO:0003677 | |
Cpe12g00785 | 335 | MobiDBLite | consensus disorder prediction | 8 | 26 | - | - | |
Cpe12g00785 | 335 | MobiDBLite | consensus disorder prediction | 196 | 217 | - | - | |
Cpe12g00785 | 335 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 57 | - | - | |
Cpe12g00785 | 335 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 60 | 319 | - | - | |
Cpe12g00785 | 335 | Pfam | AP2 domain | 125 | 176 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe12g00785 | Cpe-Chr12:7092240 | Cpe01g01302 | Cpe-Chr1:7828280 | 3.57E-65 | dispersed | |
Cpe18g00584 | Cpe-Chr18:6264092 | Cpe12g00785 | Cpe-Chr12:7092240 | 9.45E-108 | transposed | |
Cpe12g00785 | Cpe-Chr12:7092240 | Cpe17g00642 | Cpe-Chr17:5221863 | 3.89E-131 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50341 | PF00847 | AP2 | 6.70E-12 | CL0081 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe12g00785 | K09285 | - | csv:101206499 | 501.901 |