Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00802 ATGGAGCTTGGCCTGAGCTTGGGCGATGCTCCCAAGCCTTTCCGCTTCGTTGAGAAGCAGCCGCAAGTAACGCCGCGGCCGCGGCGGATTTCTCGGCCTGATTTAGGGTTCTGCGTCGACTTATCGATTGGCCGTCCGGTCGCCGGAGCGAAAGAAGACGATGAAGAGAAAATCAATCAGAGAGATTATGAATCCGACGGTAATGAAGATCCACCGATTCAACTCGATCTTCTTCCTCATAATCCCGTTCCGCGAAACCTAACTAATCCGTACCAAGGATTTCCATGGCCGTCGTCCGAAAACGATGAAGGTGAAGATCGAACCGCATCGCCTAACAGTGCGGCGTCGTCGTTTCAGATGGAGTTTGGATTGTACGGCGGCGGAGGGAACATTTCTTGCCAGAGAGAACAAATGGAAAATGGCGTAATCGAATCTGAGAGAGCGTCTTCACGAGCGAGCGATGAAGATGAAAATGGATCCACGAGGAAGAAACTCAGACTCTCGAAAGAACAATCCGCTTTTCTTGAAGAAAGCTTCAAAGAACACAACACCTTGAATCCCAAACAGAAACTTGCACTCGCTAAGCAACTGAATCTCCGTCCTCGCCAAGTGGAAGTTTGGTTCCAAAACAGAAGAGCCAGGACGAAATTGAAGCAAACGGAGGTGGATTGTGAGTATTTGAAACGATGCTGTGAAACATTAACAGAAGAGAACAGACGACTTCAAAAGGAGCTTCAAGAATTGAGAGCTTTGAAAACCACTGACTCGTTTTACATGCAATTACCAGCCACAACACTCACCATGTGTCCTTCTTGTGAAAGAGTGACCTCAACATCGGCCGGCTCCAGCGGCGGCAAATCGACGGAGGCAGTTTCGAAACGATCTGGTTTCGCCATTACTGGGCGACCAAGCTCCTCCTCTTTCCCATTTTCTGCTTAA 939 49.09 MELGLSLGDAPKPFRFVEKQPQVTPRPRRISRPDLGFCVDLSIGRPVAGAKEDDEEKINQRDYESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFPWPSSENDEGEDRTASPNSAASSFQMEFGLYGGGGNISCQREQMENGVIESERASSRASDEDENGSTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTDSFYMQLPATTLTMCPSCERVTSTSAGSSGGKSTEAVSKRSGFAITGRPSSSSFPFSA 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7237738 7239755 + Cp4.1LG12g06970.1 Cpe12g00802 478799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00802 312 CDD homeodomain 162 219 IPR001356 GO:0003677
Cpe12g00802 312 PANTHER PROTEIN, PUTATIVE-RELATED 109 292 - -
Cpe12g00802 312 SMART halz 218 261 IPR003106 GO:0006355|GO:0043565
Cpe12g00802 312 ProSiteProfiles 'Homeobox' domain profile. 158 218 IPR001356 GO:0003677
Cpe12g00802 312 MobiDBLite consensus disorder prediction 47 68 - -
Cpe12g00802 312 Gene3D - 166 216 - -
Cpe12g00802 312 SMART HOX_1 160 222 IPR001356 GO:0003677
Cpe12g00802 312 ProSitePatterns 'Homeobox' domain signature. 193 216 IPR017970 GO:0000981|GO:0006355
Cpe12g00802 312 Pfam Homeobox associated leucine zipper 218 252 IPR003106 GO:0006355|GO:0043565
Cpe12g00802 312 MobiDBLite consensus disorder prediction 43 113 - -
Cpe12g00802 312 MobiDBLite consensus disorder prediction 141 166 - -
Cpe12g00802 312 Coils Coil 224 254 - -
Cpe12g00802 312 MobiDBLite consensus disorder prediction 276 312 - -
Cpe12g00802 312 PANTHER - 109 292 - -
Cpe12g00802 312 SUPERFAMILY Homeodomain-like 153 219 IPR009057 -
Cpe12g00802 312 Pfam Homeodomain 162 216 IPR001356 GO:0003677
Cpe12g00802 312 MobiDBLite consensus disorder prediction 148 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00363 Cpe-Chr3:1939294 Cpe12g00802 Cpe-Chr12:7237738 4.11E-99 dispersed
Cpe04g01341 Cpe-Chr4:10970697 Cpe12g00802 Cpe-Chr12:7237738 7.52E-56 dispersed
Cpe08g01324 Cpe-Chr8:9505508 Cpe12g00802 Cpe-Chr12:7237738 1.88E-65 dispersed
Cpe12g00802 Cpe-Chr12:7237738 Cpe19g00701 Cpe-Chr19:5513364 5.28E-76 dispersed
Cpe12g00802 Cpe-Chr12:7237738 Cpe17g00660 Cpe-Chr17:5354676 6.47E-173 wgd
Cpe12g00802 Cpe-Chr12:7237738 Cpe02g01596 Cpe-Chr2:13425334 6.17E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50342 PF00046 Homeodomain 2.10E-15 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00802 K09338 - csv:101221600 513.072