Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe12g00821 | ATGACAGACCCTAATCACTCCAATTCCTTCAACTTCATCCCTCTCCCATCCTCTCCGCCTTCAAATTCCGGCTTCTCCCAATGCCGCCACCGTCCTCCTCCTCCTCCGCCACCGCAAGCTCTCCCTCTCCTCAACACCTTCTCGGCGGAAACCACCGATCATCCCTCCTCTTCCACCAGCTACGAACACGACTCTCCGCCACTAGCTCTCGACTTCAGCCTCTCTTGCCCTAGCTCCAACTACTCTCGTTCCATCTCGCCGGACCCCACTGGGAAAACCCTCGACGGCGATATTTCCGACCACCCTTTGCCGATCTCCGGCAAAGGTCAGTTCTGGATTCCGACCCCATCTCAGATCCTCATCGGTCCTACTCAGTTCTCTTGCCCTCTTTGTTCTAAAGCATTCAATAGATACAATAATCTTCAGATGCACATGTGGGGGCATGGTTCGCAATACAGAAAAGGACCAGAGTCACTAAAAGGAACACAGCCAACGGCAATGCTTAAGCTGCCATGCTATTGCTGCGCGCCAGGGTGCAAACACAACATCGACAACCCTCGGTCCCGACCGCTCAAGGACTTCCGCACCCTCCAAACGCATTACAAGCGAAAGCATGGAATCAAGCCGTTCACTTGTAGAAAATGCACCAAAGCCTTCGCGGTCAAAGGCGATTGGCGAACCCACGAGAAGAATTGTGGCAAGATTTGGTATTGCTTTTGTGGCTCGGACTTCAAACATAAGCGCTCTCTCAAGGACCACATTAAGGCCTTCGGTCGTGGACATGGTGCACTTGGCCTTGACTACTTTGACGACGACAATGAACCTGGGTCTGAACTTGAACACGAACAACACGAACCTCAACTCCTCTTCCATCTCCATTAA | 882 | 52.38 | MTDPNHSNSFNFIPLPSSPPSNSGFSQCRHRPPPPPPPQALPLLNTFSAETTDHPSSSTSYEHDSPPLALDFSLSCPSSNYSRSISPDPTGKTLDGDISDHPLPISGKGQFWIPTPSQILIGPTQFSCPLCSKAFNRYNNLQMHMWGHGSQYRKGPESLKGTQPTAMLKLPCYCCAPGCKHNIDNPRSRPLKDFRTLQTHYKRKHGIKPFTCRKCTKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGRGHGALGLDYFDDDNEPGSELEHEQHEPQLLFHLH | 293 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 7326664 | 7328783 | - | Cp4.1LG12g06700.1 | Cpe12g00821 | 478818 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe12g00821 | 293 | SUPERFAMILY | beta-beta-alpha zinc fingers | 119 | 148 | IPR036236 | - | |
Cpe12g00821 | 293 | SMART | c2h2final6 | 126 | 148 | IPR013087 | - | |
Cpe12g00821 | 293 | SMART | c2h2final6 | 210 | 230 | IPR013087 | - | |
Cpe12g00821 | 293 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 128 | 148 | IPR013087 | - | |
Cpe12g00821 | 293 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 126 | 153 | IPR013087 | - | |
Cpe12g00821 | 293 | PANTHER | ZINC FINGER PROTEIN WIP2 | 2 | 282 | IPR043584 | GO:0003700|GO:0010468 | |
Cpe12g00821 | 293 | SUPERFAMILY | beta-beta-alpha zinc fingers | 193 | 230 | IPR036236 | - | |
Cpe12g00821 | 293 | MobiDBLite | consensus disorder prediction | 1 | 65 | - | - | |
Cpe12g00821 | 293 | Gene3D | Classic Zinc Finger | 125 | 148 | - | - | |
Cpe12g00821 | 293 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Cpe12g00821 | 293 | PANTHER | ZINC FINGER PROTEIN WIP2-LIKE | 2 | 282 | - | - | |
Cpe12g00821 | 293 | Gene3D | Classic Zinc Finger | 188 | 261 | - | - | |
Cpe12g00821 | 293 | Pfam | Zinc finger, C2H2 type | 126 | 145 | IPR013087 | - | |
Cpe12g00821 | 293 | MobiDBLite | consensus disorder prediction | 44 | 64 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe12g00821 | Cpe17g00682 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe12g00821 | Cpe-Chr12:7326664 | Cpe19g00081 | Cpe-Chr19:598309 | 4.27E-108 | dispersed | |
Cpe12g00821 | Cpe-Chr12:7326664 | Cpe16g00887 | Cpe-Chr16:8355545 | 7.67E-114 | wgd | |
Cpe12g00821 | Cpe-Chr12:7326664 | Cpe17g00682 | Cpe-Chr17:5457674 | 4.31E-148 | wgd | |
Cpe12g00821 | Cpe-Chr12:7326664 | Cpe05g00504 | Cpe-Chr5:2977391 | 2.01E-109 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50346 | PF00096 | zf-C2H2 | 0.0015 | CL0361 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe12g00821 | - | - | csv:101209911 | 498.819 |