Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00821 ATGACAGACCCTAATCACTCCAATTCCTTCAACTTCATCCCTCTCCCATCCTCTCCGCCTTCAAATTCCGGCTTCTCCCAATGCCGCCACCGTCCTCCTCCTCCTCCGCCACCGCAAGCTCTCCCTCTCCTCAACACCTTCTCGGCGGAAACCACCGATCATCCCTCCTCTTCCACCAGCTACGAACACGACTCTCCGCCACTAGCTCTCGACTTCAGCCTCTCTTGCCCTAGCTCCAACTACTCTCGTTCCATCTCGCCGGACCCCACTGGGAAAACCCTCGACGGCGATATTTCCGACCACCCTTTGCCGATCTCCGGCAAAGGTCAGTTCTGGATTCCGACCCCATCTCAGATCCTCATCGGTCCTACTCAGTTCTCTTGCCCTCTTTGTTCTAAAGCATTCAATAGATACAATAATCTTCAGATGCACATGTGGGGGCATGGTTCGCAATACAGAAAAGGACCAGAGTCACTAAAAGGAACACAGCCAACGGCAATGCTTAAGCTGCCATGCTATTGCTGCGCGCCAGGGTGCAAACACAACATCGACAACCCTCGGTCCCGACCGCTCAAGGACTTCCGCACCCTCCAAACGCATTACAAGCGAAAGCATGGAATCAAGCCGTTCACTTGTAGAAAATGCACCAAAGCCTTCGCGGTCAAAGGCGATTGGCGAACCCACGAGAAGAATTGTGGCAAGATTTGGTATTGCTTTTGTGGCTCGGACTTCAAACATAAGCGCTCTCTCAAGGACCACATTAAGGCCTTCGGTCGTGGACATGGTGCACTTGGCCTTGACTACTTTGACGACGACAATGAACCTGGGTCTGAACTTGAACACGAACAACACGAACCTCAACTCCTCTTCCATCTCCATTAA 882 52.38 MTDPNHSNSFNFIPLPSSPPSNSGFSQCRHRPPPPPPPQALPLLNTFSAETTDHPSSSTSYEHDSPPLALDFSLSCPSSNYSRSISPDPTGKTLDGDISDHPLPISGKGQFWIPTPSQILIGPTQFSCPLCSKAFNRYNNLQMHMWGHGSQYRKGPESLKGTQPTAMLKLPCYCCAPGCKHNIDNPRSRPLKDFRTLQTHYKRKHGIKPFTCRKCTKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGRGHGALGLDYFDDDNEPGSELEHEQHEPQLLFHLH 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7326664 7328783 - Cp4.1LG12g06700.1 Cpe12g00821 478818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00821 293 SUPERFAMILY beta-beta-alpha zinc fingers 119 148 IPR036236 -
Cpe12g00821 293 SMART c2h2final6 126 148 IPR013087 -
Cpe12g00821 293 SMART c2h2final6 210 230 IPR013087 -
Cpe12g00821 293 ProSitePatterns Zinc finger C2H2 type domain signature. 128 148 IPR013087 -
Cpe12g00821 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 126 153 IPR013087 -
Cpe12g00821 293 PANTHER ZINC FINGER PROTEIN WIP2 2 282 IPR043584 GO:0003700|GO:0010468
Cpe12g00821 293 SUPERFAMILY beta-beta-alpha zinc fingers 193 230 IPR036236 -
Cpe12g00821 293 MobiDBLite consensus disorder prediction 1 65 - -
Cpe12g00821 293 Gene3D Classic Zinc Finger 125 148 - -
Cpe12g00821 293 MobiDBLite consensus disorder prediction 1 28 - -
Cpe12g00821 293 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 2 282 - -
Cpe12g00821 293 Gene3D Classic Zinc Finger 188 261 - -
Cpe12g00821 293 Pfam Zinc finger, C2H2 type 126 145 IPR013087 -
Cpe12g00821 293 MobiDBLite consensus disorder prediction 44 64 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe12g00821 Cpe17g00682 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00821 Cpe-Chr12:7326664 Cpe19g00081 Cpe-Chr19:598309 4.27E-108 dispersed
Cpe12g00821 Cpe-Chr12:7326664 Cpe16g00887 Cpe-Chr16:8355545 7.67E-114 wgd
Cpe12g00821 Cpe-Chr12:7326664 Cpe17g00682 Cpe-Chr17:5457674 4.31E-148 wgd
Cpe12g00821 Cpe-Chr12:7326664 Cpe05g00504 Cpe-Chr5:2977391 2.01E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50346 PF00096 zf-C2H2 0.0015 CL0361 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00821 - - csv:101209911 498.819