Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00834 ATGGCGATGACTAGGGTTCATGAGCCATCGCGATCCTTAGCAGGTAATACATGCACCATTCGGCTGACTGAAATTTTCGGGCGGGCGACCAAGTCTATTTTGGGCTTCTTTCTCATGATGGGTCTCTGCAATGGCGTGCATTACCTTTTGAGACCTTTTTCTCAACCTCGCACTACTTCTGATACGATCGTTGGTTTGGTTGTTGGAAACTTCATGAGGAAAGAACTCGATCTGTCAATACATAAGACGCTGCGTTATATTGTCGACTTTGGTATGACATGCTATATGTTTGTGCTGGGATTGGAGATGGATCCATGTGTACTCTTCAAAGCACCTACACGTGATGCTAAAGTAGCTTATGCCGGAATGATTTCAACACTCATCTTAGCCTGTTCCACAATCCCATTTATTAGCTTTTCGAAGTCGAAAGAGATCAGTTTCATCCTCTCGCTCTCAACTGTTCTCTCTAGCACAGCTTCTCCTGTGCTAACCCGTTTGATCACCAATCTTAAAATAGGCAGGTCGGATATAGGCCGACTTGTTATTGCTGCTGGAATGCATTCTGATTTTATATCCACTCTCGCAATCTGTATAGGTTATCTATTTTGCCAATGCCAAGAGACGCGTCTCTCCATTATAAATGGTTTTCAATTAGGTTTTGTTCTATTGATCCAGATGATAATGGCGGCGAAGGTTTCACCAATATTCATGAACTGGGTGAATAACGAAAACCCCGAGGGTAAACCTATGAAGGGTCCTCACCTGGTTCTTGCAGTTGCTTTCATGGCCTTCCTTTGCTGCTGCCCTACTATATTTGGTTACAACCCGACTCTCAGTGCATTCTTGGCTGGAACATTTTTACCTCGAGAAGGTAGAGTATCAAGATGGGCAATTGGAAAAATTAACTACCTGCTTACTACTGTTTTCTATCCCATCTTCTTCTTTTGGATGGGGGTTGAATCCAAGTTGAGTGACTTTGAGCCTGGACAAATAATAACATGGGTCAGATTACTTCTGCTTTTTGCTATTGTAACCGTAGGAAAAGTTGTTGGTACTGTCATTGCTGGGGCAATTTTGGGGTTTCATTGGCCTGAATCTGTAGCACTTGGGCTGCTGTTAACCATGAAGGGCCATTTTCATATATACTTGGCCATATCTGCAAAAATAGCTGGAAAGATATCTACATCTACGAGCATTGCGATGGTATTTGTAATCTTCTTCACAGTCGTGCATGCTCCAAAAGTTGTAGCTCATATAATTAGAAGGGCGAGGAAACGCACACCTACACATCGAATGGCTCTCGAATTGCTTGACCCATCAAGTGAGCTTAAGATCTTGTTATGTATACATGGACCTCATAACACTGGAGCAGCCATTAACATCATGGAGATTTCTCGGGGGACGGCTAACCCTGGAGTTGTTGTATATGTCACAGACATGATTGAACTTACAGATGAAATAGCAGCCACGTTAGTGCAGGGTGAAGGAGTGGACACTGTAACTGTAACCCACACAGGAGTGACTCAAATGAGAGACCAAGTTACTACTGCATTTCAGAGATATGTAGATGAAAATGGAGATGGAATTACCCTTAGAAGAATGTTGGCTCTCTCAGCATTCAATTGTATGGCACAAGACATTTGCATTTTAGCGGAGGACTTGTTGGGTGCTCTTATCATACTGCCATTCCACAAGAACCAGCGCGGAGATGGGTCGTTGAGCGAGGGCCAAGCAGGTTTCCGCTATGTGAACCGCAAGGTTATCAGACACGCCCCTTGTTCCGTGGGAATCCTAGTGGATCGAGGTCTTGGATCAGTAGAGAAAATTTCAAGGTCGTACGTAACCCTGAACGTGGCAGTGATCTTCATTGGCGGTAAAGACGACCGAGAAGCATTAGCCTACGCAGGTCGAGTAGCTAGGCATCCCGGAGTTAAACTCTCTGTGATTAGATTCTTGGTGGATGCTGATGCAGAAAATGCTGCAAGAAGAGCTGGGACTTACAGGATCAGTGTTGCTGAGCAGGAAGAGGAAATGAGACAAGACGACGAATGCTTTGCTTATTTTTATGAACGACACGTGGCTGGTGGGCACGTCGCTTACGTTGAAAAACACATGGCCAGTTCCGCAGAGACGTATTCTACTTTGAAATCACTGGAAGGTCAATACACTCTCGTAATCGTAGGTCGAGGTGGGGGAGTGAACTCGGTGTTAACTTACGGGATGAATGATTGGCAACAATGTCCAGAACTGGGTCCTATAGGGGACGTTCTCTCCGGGTCTGAATTCTCCGCTAAGACCTCGGTTTTGATCATCCATCAACACAATCTAAAAGGTGAACTAGATGGACTTGATGATGATTTTTCAATAATGTAG 2373 44.46 MAMTRVHEPSRSLAGNTCTIRLTEIFGRATKSILGFFLMMGLCNGVHYLLRPFSQPRTTSDTIVGLVVGNFMRKELDLSIHKTLRYIVDFGMTCYMFVLGLEMDPCVLFKAPTRDAKVAYAGMISTLILACSTIPFISFSKSKEISFILSLSTVLSSTASPVLTRLITNLKIGRSDIGRLVIAAGMHSDFISTLAICIGYLFCQCQETRLSIINGFQLGFVLLIQMIMAAKVSPIFMNWVNNENPEGKPMKGPHLVLAVAFMAFLCCCPTIFGYNPTLSAFLAGTFLPREGRVSRWAIGKINYLLTTVFYPIFFFWMGVESKLSDFEPGQIITWVRLLLLFAIVTVGKVVGTVIAGAILGFHWPESVALGLLLTMKGHFHIYLAISAKIAGKISTSTSIAMVFVIFFTVVHAPKVVAHIIRRARKRTPTHRMALELLDPSSELKILLCIHGPHNTGAAINIMEISRGTANPGVVVYVTDMIELTDEIAATLVQGEGVDTVTVTHTGVTQMRDQVTTAFQRYVDENGDGITLRRMLALSAFNCMAQDICILAEDLLGALIILPFHKNQRGDGSLSEGQAGFRYVNRKVIRHAPCSVGILVDRGLGSVEKISRSYVTLNVAVIFIGGKDDREALAYAGRVARHPGVKLSVIRFLVDADAENAARRAGTYRISVAEQEEEMRQDDECFAYFYERHVAGGHVAYVEKHMASSAETYSTLKSLEGQYTLVIVGRGGGVNSVLTYGMNDWQQCPELGPIGDVLSGSEFSAKTSVLIIHQHNLKGELDGLDDDFSIM 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7403559 7407578 - Cp4.1LG12g06710.1 Cpe12g00834 478831

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00834 790 Gene3D - 29 429 IPR038770 -
Cpe12g00834 790 Gene3D - 444 743 - -
Cpe12g00834 790 PANTHER CATION/H(+) ANTIPORTER 28 20 787 - -
Cpe12g00834 790 PANTHER CATION/H + ANTIPORTER 20 787 - -
Cpe12g00834 790 Pfam Sodium/hydrogen exchanger family 43 419 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00834 - - - csv:101211645 1389.79
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00834 Cpe17g00698 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00834 Cpe-Chr12:7403559 Cpe05g01060 Cpe-Chr5:7011636 4.45E-107 dispersed
Cpe12g00834 Cpe-Chr12:7403559 Cpe17g00698 Cpe-Chr17:5553126 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g1118 . . . . . . . . Cmo08g00509 Cmo17g00938 . . . . . Cpe17g00698 Cpe12g00834 Bhi09g00657 . . . Hepe03g1756 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car17g00919 . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe05g01060 . 10 790 Antiporter Super Family AT2G13620 71.3 0.0e+00 1113.2
Cpe16g00093 . 21 781 Antiporter Super Family AT2G13620 66.6 1.0e-303 1039.6
Cpe19g00367 . 75 807 Antiporter Super Family AT3G53720 59.3 5.7e-232 801.2
Cpe01g00640 . 839 1522 Antiporter Super Family AT3G53720 50.1 2.1e-181 633.3
Cpe10g00875 . 88 641 Antiporter Super Family AT3G53720 59.9 5.8e-176 615.1
Cpe14g00481 . 1607 2403 Antiporter Super Family AT5G41610 68.4 1.4e-305 1045.8
Cpe01g00640 . 757 1522 Antiporter Super Family AT5G41610 66.9 1.1e-294 1009.6
Cpe01g00640 . 757 1522 Antiporter Super Family AT4G23700 67.4 2.6e-291 998.4
Cpe14g00481 . 11 796 Antiporter Super Family AT4G23700 64.4 5.1e-287 984.2
Cpe01g00640 . 760 1522 Antiporter Super Family AT3G17630 64.0 2.8e-274 941.8
Cpe14g00481 . 809 1574 Antiporter Super Family AT3G17630 63.5 3.6e-269 924.9
Cpe14g00481 . 3 777 Antiporter Super Family AT1G64170 58.1 1.3e-239 826.6
Cpe01g00640 . 767 1522 Antiporter Super Family AT1G64170 57.7 9.3e-233 803.9
Cpe05g01060 . 10 790 Antiporter Super Family AT2G13620 71.3 0.0e+00 1113.2
Cpe16g00093 . 21 781 Antiporter Super Family AT2G13620 66.6 1.0e-303 1039.6
Cpe14g00481 . 3 777 Antiporter Super Family AT1G64170 58.1 1.3e-239 826.6
Cpe01g00640 . 767 1522 Antiporter Super Family AT1G64170 57.7 9.3e-233 803.9
Cpe01g00640 . 757 1522 Antiporter Super Family AT4G23700 67.4 2.6e-291 998.4
Cpe14g00481 . 11 796 Antiporter Super Family AT4G23700 64.4 5.1e-287 984.2
Cpe14g00481 . 1607 2403 Antiporter Super Family AT5G41610 68.4 1.4e-305 1045.8
Cpe01g00640 . 757 1522 Antiporter Super Family AT5G41610 66.9 1.1e-294 1009.6
Cpe01g00640 . 760 1522 Antiporter Super Family AT3G17630 64.0 2.8e-274 941.8
Cpe14g00481 . 809 1574 Antiporter Super Family AT3G17630 63.5 3.6e-269 924.9
Cpe19g00367 . 75 807 Antiporter Super Family AT3G53720 59.3 5.7e-232 801.2
Cpe01g00640 . 839 1522 Antiporter Super Family AT3G53720 50.1 2.1e-181 633.3
Cpe10g00875 . 88 641 Antiporter Super Family AT3G53720 59.9 5.8e-176 615.1
Cpe12g00834 CST 47 790 Antiporter Super Family AT3G52080 54.1 9.2e-233 803.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008009 0 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe12g00834 Cpe_Chr12 FPKM 36.787777 41.547565 81.672279 79.212822 18.131119 18.296515 19.978323 119.653305 127.940453 128.408676