Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00841 ATGGCGGAAGCCAAACGTCGCGCAAAGCGCCCTAGAATTACGAGGGGGGACGATGATTATATGCCTGGAAGTATAATTGAGATTGAGCTTCATAACTTTATGACCTTTAACCACTTGAAATGTAAACCAGGATCACGTCTAAACCTTGTAATTGGGCCCAATGGATCTGGTAAAAGCTCTATTGTATGTGCTATTGCCCTTGGCCTTGGTGGTGAGCCTCAGCTCCTTGGAAGGGCGACCAGTGTTGGAGCATATGTGAAGCGCGGGGAGGAGTCTGGTTATGTCAGAATAACCTTGAGAGGGAATAGTAAAGAGGAGAATATTACAATTACACGTAAAATGGACACACACAACAAATCTGAGTGGTTGTTCAATGGAAAAGTTGTGCCAAAAAAGGATGTAGCTGGAATCATTCAAAGTTTTAACATTCAAGTTAATAACTTGACTCAATTTTTACCTCAGGACAGGGTTTGTGAGTTTGCCAAATTAACTCCCGTCCAACTTTTAGAAGAGACTGAAAAGGCAGTTGGTGATCCTCAACTTCCAATCCTACATCGTGTACTTGTTGAGAAAAGCCATGACATAAAAAATATAGAACGAGCTGTTGAGAAAAATGGAGACACCCTAGATCAGCTAAAGGCATTAAATGTCGAGCAGGAGAAAGATGTTGAGCGTGTTCGTCAAAGAGAAGAACTTTTAAAAAAGGTTGAGTCCATGAAAAAGAAGCTGCCATGGCTGAAGTATGACATGAAAAAGGCTGAATACATGGAAGTTAAGGAAAAGGAAAAGGAGGCAAAAAAGAAGTTAGATGAAGCTGCAAATACTTTGAATGATTTAAAGGAGCCAATTGAGAAACAAAGAAAGGAGAAGGCAAAGTTGGATGCGAAAACTAAAAAGTATAGCACTCTCATTAATAATAATCACAAGAAAAGAATGGAACTTCAGGAAACTGGAAATCATTTGGGGGTGCAAGTGCAAGGAAAATTGAAAGAAATGGAAGACTTGAGGAAACAAGAAGAATCTCGTCAACAGAGAATCTTACAGGCTAAAGAGGAACTTGAAGCTGCTGAATTGGAACTTCAGAATTTGCCTCCTTTCAAACATCCCAAGGACGAGATTGAACGGTTGCGCGCTCAAATTTTGGAGCTGGAAGTTTCAGCAAGTCAGAAGAGACTTATGAAGTCAGAGATTGAAAAAAATATATCCCAAAAAAGAAATACTTTGAGGCAGTGCTTGGATAGGTTAAAGGATATGGAGAATACTAATACAAAACTACTACAGGCATTGAGAAATTCTGGAACAGAGAAGATTTTTGAAGCTTATCACTGGCTTCAAGAACATCGCCATGAATTCAAGAAGGAGGTGTATGGTCCAGTGTTGCTAGAGGTTAATGTGTCAAATCGGACTCATGCTGACTACTTAGAAGGTCATATCCCATCATATGCCTGGAAGTCCTTCATAACTCAAGATTCGGATGATCGTGACATAATGGTAAAAAACTTGGGTTCATTTGGTGTTCCCATCTTAAACTATGTGGGAGGTGAAAGGCGCACAAATCAGCATTTTGAGGTGTCTGAGGAGGTTCGTGCATTTGGCATATATTCCCGGCTAGACCAAATTTTTGATGCTCCTGCAGCTGTAAAGGAGGTTTTGACCATGCAGTTTGGTTTGGAGCATTCATATATTGGCTCAAAGGTAACTGATCAGAAGGCAGACGAGGTCTCAAAATTGGGAATTTTAGATTTTTGGACTCCAGATAATCATTATCGATGGTCTCGCTCTAGATACGGTGGTCATATGTCAGGAACTGTGGATCCAGTTGATCGCTCACGTCTTCTCTTGTGCAACTTGGATGCGGGAGAAATTGATGGGCTTCGGTCCAGGAAAAATGAGCTAGAAGAATCTATTTCTGCTTTAGAAGAAAATTGTAAATCATGTCAGACTGAACTAAGATTGATAGAGGACGAAGAAGCTAAACTTCGCAAACATCGGGATGATATTTTAAATACTGTGCAACATGAGAAGAGAAAACGCCGTGAAATGGAAAATCGCATTGATCAAAGAAAAAAGAAATTAGAATCTATGGAGCGGGAAGATGACTTAGATACTGTTGTGGCCAAGCTTGCCGACCAAGCTACAAATTTTAACGTTCAAAGGTTCCATTGTGCAATTGAAATTAAGCATTTGCTTGTTGAGGCCGTTTCCTATAGACAGAACTTGACTAAGAGCCATATGTCCTCCATTGAAATTGAAGCAAAGATCAGAGAATTGGAGGTAAATCTGAAGCAGCATGAAAAGTTTGCTCTGCAAGCGTCAGTGCAGTTTGAGTACTGCAAGAAGGAAGTCGAGGACTATCGACAGCAACTCTCAGTTGCCAAGAAGTATGCAGAATCTATTGCTGTGATCACACCTGATCTCGAGAAGGAATTTCTTGAGATGCCTACTACAATTGAGGAATTGGAAGCTGCTATTCAAGATAATATTTCTCAGGCTAATTCCATTCTATTCTTAAACCATAATGTGCTTGAGGAATACGAACATCGTCAGCGTCAGATAAATACCATTGCACGAAAACTAGAAGCTGATAAACATGAACTAAGGAAGTGTATGGCTGAAGTTGATGAGCTGAAGGGAAATTGGCTCCCAACTTTAAGAAAACTTGTTTCTCAGATAAATGAGACTTTTAGTCGCAATTTTCAAGAGATGGCTGTTGCTGGAGAAGTGTTATTGGATGAGCATGATATGGACTTCGATCAATATGGGATTCTTATTAAAGTGAAGTTCAGACAAGCAGGTCAGCTTCAGGTTCTCAGTGCACATCATCAATCGGGAGGGGAACGCTCGGTGTCGACAATCTTGTATCTTGTTTCCCTTCAAGACCTTACCAACTGCCCATTTAGAGTAGTTGACGAGATAAACCAAGGAATGGATCCCATAAATGAACGGAAGATGTTCCAGCAGTTGGTGAGAGCTGCCAGCCAAACAAATACACCACAGTGCTTCCTACTCACTCCAAAGTTACTTCCAGAACTGGAATATAGTGGGGCCTGTAGTATACTGAATATAATGAATGGTCCTTGGATCGAGCAGCCCTCGAAAGCATGGAGCAATGGAGATAGCTGGGGAACATTAATGAACTACGTTGGAGCAAGCCGATGTTGA 3162 40.86 MAEAKRRAKRPRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSSIVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNSKEENITITRKMDTHNKSEWLFNGKVVPKKDVAGIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVESMKKKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIEKQRKEKAKLDAKTKKYSTLINNNHKKRMELQETGNHLGVQVQGKLKEMEDLRKQEESRQQRILQAKEELEAAELELQNLPPFKHPKDEIERLRAQILELEVSASQKRLMKSEIEKNISQKRNTLRQCLDRLKDMENTNTKLLQALRNSGTEKIFEAYHWLQEHRHEFKKEVYGPVLLEVNVSNRTHADYLEGHIPSYAWKSFITQDSDDRDIMVKNLGSFGVPILNYVGGERRTNQHFEVSEEVRAFGIYSRLDQIFDAPAAVKEVLTMQFGLEHSYIGSKVTDQKADEVSKLGILDFWTPDNHYRWSRSRYGGHMSGTVDPVDRSRLLLCNLDAGEIDGLRSRKNELEESISALEENCKSCQTELRLIEDEEAKLRKHRDDILNTVQHEKRKRREMENRIDQRKKKLESMEREDDLDTVVAKLADQATNFNVQRFHCAIEIKHLLVEAVSYRQNLTKSHMSSIEIEAKIRELEVNLKQHEKFALQASVQFEYCKKEVEDYRQQLSVAKKYAESIAVITPDLEKEFLEMPTTIEELEAAIQDNISQANSILFLNHNVLEEYEHRQRQINTIARKLEADKHELRKCMAEVDELKGNWLPTLRKLVSQINETFSRNFQEMAVAGEVLLDEHDMDFDQYGILIKVKFRQAGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQTNTPQCFLLTPKLLPELEYSGACSILNIMNGPWIEQPSKAWSNGDSWGTLMNYVGASRC 1053
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7452762 7467564 + Cp4.1LG12g06660.1 Cpe12g00841 478838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00841 1053 Gene3D - 24 285 IPR027417 -
Cpe12g00841 1053 CDD ABC_SMC5_euk 926 1028 - -
Cpe12g00841 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 996 IPR027417 -
Cpe12g00841 1053 CDD ABC_SMC5_euk 23 180 - -
Cpe12g00841 1053 Gene3D - 847 1012 IPR027417 -
Cpe12g00841 1053 Coils Coil 622 656 - -
Cpe12g00841 1053 Coils Coil 842 879 - -
Cpe12g00841 1053 Coils Coil 248 296 - -
Cpe12g00841 1053 Coils Coil 401 428 - -
Cpe12g00841 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 749 1004 IPR027417 -
Cpe12g00841 1053 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 19 1048 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Cpe12g00841 1053 Pfam RecF/RecN/SMC N terminal domain 25 993 IPR003395 -
Cpe12g00841 1053 Coils Coil 329 359 - -
Cpe12g00841 1053 Coils Coil 664 698 - -
Cpe12g00841 1053 Coils Coil 195 229 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00305 Cpe-Chr1:1718370 Cpe12g00841 Cpe-Chr12:7452762 4.10E-20 dispersed
Cpe12g00841 Cpe-Chr12:7452762 Cpe12g01123 Cpe-Chr12:9248023 3.14E-07 transposed
Cpe12g00841 Cpe-Chr12:7452762 Cpe17g01140 Cpe-Chr17:8651703 3.02E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00841 K22803 - csv:101210248 1939.85